Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44880 678 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G29230 397 / 2e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 384 / 2e-124 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 363 / 1e-116 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 350 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G45350 352 / 1e-113 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13410 342 / 2e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 341 / 1e-108 SLO1 SLOW GROWTH 1 (.1) AT2G20540 336 / 2e-108 MEF21 mitochondrial editing factor 21 (.1) AT1G31430 336 / 3e-108 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026886 [exp] 577 / 0 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014113 [exp] 390 / 2e-128 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 387 / 3e-127 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 384 / 1e-124 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 383 / 2e-124 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 376 / 1e-121 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 368 / 6e-121 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 368 / 6e-121 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 367 / 7e-121 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046200 [exp] 775 / 0 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G125500 [exp] 414 / 6e-138 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 407 / 3e-136 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 398 / 6e-130 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 382 / 7e-124 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 378 / 4e-123 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G019500 [exp] 375 / 3e-122 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 375 / 5e-121 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G135600 [exp] 368 / 4e-120 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G086200 [exp] 370 / 2e-119 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003422 pacid=23164865 polypeptide=Lus10003422 locus=Lus10003422.g ID=Lus10003422.BGIv1.0 annot-version=v1.0 ATGCAACCTTTTGTTCGTTGGACTCCCATCGAAAGAAAATGCCTATCGCTTCTTCAGCAAACCCAGGCAAGGAAGCATCTATTGCAGATTCATTCTGTGA TCGTTTCACATGGTCTTCAGGGAAACCTCAAAATTTCCTCGAAGTTCATCTATTCATGCGGTTCTGTTGCTCAGGGGGCCTCTCACCCATCGACCCTGGC CATTGTAACCCATGCCCGTCAGATGTTCAATCGTCTGCCCTGCAAAGATGACACCTTCCTTTGCAATTCCATGATCCAAGCCCATGTGGGTGCCCGCCAG TTTGATGATGCCGTTACTCTTTACAGGTATCTTAAGGGGTGGAAGACTTTCGTGCCTAATAATTTTACCTTTACCTCTTTGGCAAAGTCTTGTGGACAAA GCAAGTGTCTTTATGAAGGTCTGCAGATGCATTCCGAAGTTGTGAAGCTTGGGTTTTGCTTAGACTTGTATGTTTCAACTGCACTGGTTGATATGTATGC AAAGGTTGGTAAGTTATGCTTTGCGAGTAACATGTTCGATGAAATGACTCAACGAAGCTTGGTTTCTTGGACGGCTCTAATTGGCGGCTACGTAAGGTCT GGGAATATGAGTCGTGCAAGGCTGCTTTTCGATCAAATGCCCGTGAAAGATTGTGCAGTTTATAACGCAATAATTGACGGTTATGTCAAAGTGGGAGGTA TGGATTTGGCTCGAACTTTGTTTGATGAGATGCCATATAGGAACGTGATCACTTGGACTACTATGATTCATGGGTACTGCAATGTCGGTGACGTTCCATC TGCCAGATTTCTATTCGATTCCATGCCTGGGAAGAACCTGTTTTCTTGGAATGCAATGATTGGTGGGTATTGCCAGAACAAACAGCCCCAAGAAGCTGTA AAACTGTTTCGGGAAATGCAGTCTAACACTTCACTTGAACCAGACGAAGTTACAGTTGTTGGCATTCTTCCAGCAATTGCTGACATGGGGGCTGTGGAAT TGGGACGCTGGATTCATCATTACGTTGAGAGGAAAAAACTCGATCGATCAACAAAAGTCTGCACCTCCCTTGTGGACATGTATGCAAAATGTGGCGAAAT CTCAAAGGCAAGAAGAGTATTTGACCAGATTCCCAAGAAGGAAATAACAACTTGGAATGCTCTGATAAATGGACTTGCAGTCAATGGTGATGCTAGGAAA GCGATGCAGGTTTTCATGGATATGCAACTTGAAGGAATAAAACCGAATGACATAACGATGTTAGGTGCTCTTAGTGCTTGTAACCATGGTGGGCTTTTAG AAGCAGGCAGGAGATTGTTTGAGGCTATGGATGACTTTGAGCTTACCCCAAGAATCGAACATTATGGGTGTATGATCGATTTGCTAGGAAGAGGAGGGTG CTTGGAGGAAGCAGAGAATTTGATGAACAACATGCCTTTTGAGGCCAATGGTATAATTTTGAGCTCGTTTTTGTCTGCCTGCGTGAACTCCAAGGACATG ATGAGGGCTGAAAGAGTACTAAATCTGGCAGTTAAACTGGAGCCAGGGAATGATGGGAATTATGTCATGTTAGGTAACTTATATGCCAAGGATAAGAGAT GGGGACAAGTTGAAGAAGTAAAAGGTTTGATGAAGAGAAATGGAGCAAAAAAGGAGGCTGGCAGCAGTGCTATAGAGGTTGATGGGGAGGTTTCGGAATT CATATCTGGAGGCAGAGAACATCCCCAGTGGGATAGAATAAAGCTGGTGATTGGTCAGCTGAGAGATCAAATGTAG
AA sequence Show only first row Show all	>Lus10003422 pacid=23164865 polypeptide=Lus10003422 locus=Lus10003422.g ID=Lus10003422.BGIv1.0 annot-version=v1.0 MQPFVRWTPIERKCLSLLQQTQARKHLLQIHSVIVSHGLQGNLKISSKFIYSCGSVAQGASHPSTLAIVTHARQMFNRLPCKDDTFLCNSMIQAHVGARQ FDDAVTLYRYLKGWKTFVPNNFTFTSLAKSCGQSKCLYEGLQMHSEVVKLGFCLDLYVSTALVDMYAKVGKLCFASNMFDEMTQRSLVSWTALIGGYVRS GNMSRARLLFDQMPVKDCAVYNAIIDGYVKVGGMDLARTLFDEMPYRNVITWTTMIHGYCNVGDVPSARFLFDSMPGKNLFSWNAMIGGYCQNKQPQEAV KLFREMQSNTSLEPDEVTVVGILPAIADMGAVELGRWIHHYVERKKLDRSTKVCTSLVDMYAKCGEISKARRVFDQIPKKEITTWNALINGLAVNGDARK AMQVFMDMQLEGIKPNDITMLGALSACNHGGLLEAGRRLFEAMDDFELTPRIEHYGCMIDLLGRGGCLEEAENLMNNMPFEANGIILSSFLSACVNSKDM MRAERVLNLAVKLEPGNDGNYVMLGNLYAKDKRWGQVEEVKGLMKRNGAKKEAGSSAIEVDGEVSEFISGGREHPQWDRIKLVIGQLRDQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	0	1
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	1.0	0.8117
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10039117 [exp]	1.4	0.8046
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	2.4	0.7774
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10005913 [exp]	5.5	0.7968
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	16.7	0.7878
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	16.7	0.7823
AT4G18425			Protein of unknown function (D...		Lus10015395 [exp]	17.1	0.6902
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	19.0	0.6904
AT5G02050			Mitochondrial glycoprotein fam...		Lus10012653 [exp]	19.1	0.7040
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	20.3	0.7359

Compare expression of checked genes

Lus10003422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.