Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31860 612 / 0 Protein phosphatase 2C family protein (.1.2) AT2G25070 587 / 0 Protein phosphatase 2C family protein (.1) AT2G25620 142 / 1e-38 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT2G33700 140 / 4e-38 Protein phosphatase 2C family protein (.1) AT5G10740 136 / 8e-37 Protein phosphatase 2C family protein (.1) AT5G24940 137 / 3e-36 Protein phosphatase 2C family protein (.1) AT3G51470 134 / 4e-36 Protein phosphatase 2C family protein (.1) AT1G48040 131 / 1e-34 Protein phosphatase 2C family protein (.1) AT1G43900 129 / 7e-34 Protein phosphatase 2C family protein (.1) AT2G29380 128 / 1e-33 HAI3 highly ABA-induced PP2C gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026885 [exp] 706 / 0 AT4G31860 584 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10042416 [exp] 662 / 0 AT4G31860 610 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026253 [exp] 649 / 0 AT2G25070 607 / 0.0 Protein phosphatase 2C family protein (.1) Lus10026886 [exp] 177 / 3e-50 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013124 [exp] 147 / 1e-40 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 147 / 1e-40 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10016030 [exp] 141 / 5e-38 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 139 / 5e-37 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 137 / 7e-37 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017701 [exp] 642 / 0 AT4G31860 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G265100 [exp] 640 / 0 AT4G31860 606 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G043000 [exp] 573 / 0 AT4G31860 548 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.003G183800 [exp] 569 / 0 AT4G31860 547 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017800 [exp] 262 / 3e-87 AT4G31860 253 / 5e-84 Protein phosphatase 2C family protein (.1.2) Potri.018G115100 [exp] 142 / 5e-39 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.007G058700 [exp] 141 / 3e-38 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 139 / 1e-37 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 138 / 3e-37 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.005G102500 [exp] 137 / 4e-37 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10003423 pacid=23164883 polypeptide=Lus10003423 locus=Lus10003423.g ID=Lus10003423.BGIv1.0 annot-version=v1.0 ATGGGTATATATCTCAGTTCTCCCAAAACAGAGAAATTCTCAGAGGATGGAGAAAATGCTAAGCTCAGATATGGTTTATCGTCCATGCAAGGGTGGCGTG CAACCATGGAAGATGCGCATGCTGCTTTCCCTGATCTGGATGCTTCTACTTCATTCTTCGGTGTTTACGATGGCCATGGAGGTAAAGTGGTAGCAAAGTT CTGTGCCAAATTTCTTCATCAACAGGTTCTCAAGCATGAGGCATATATAGCTGGTGATATAGGAACTTCTCTTCAGAAATCATTTTTCAGAATGGACGAA ATGATGCGTGGACAAAGAGGATGGAGAGAGTTAGCTGTTTTAGGTGATAAAATAAATAAGTTCAGTGGCATGATTGAAGGGTTAATATGGTCCCCAAAAG CTGGTGAAAACAGTGAGCAACATGATGATTGGGCTTTTGAAGAGGGACCACATTCTGATTTTTCTGGTCCTACATCTGGGAGCACGGCTTGTGTTGCAGT TATAAGAAACAATCAACTTGTCGTTGCAAACGCTGGTGATTCTCGATGTGTGATATCACGAAAGGGACAGGCATACAATCTATCCAGAGATCACAAACCT GATCTTGAGGCTGAGAAAGAAAGGATTTTAAAAGCTGGTGGCTTCATACATGCAGGACGTGTCAATGGCAGCTTGAATCTTGCAAGAGCTATTGGTGACA TGGAATTCAAACAGAATAAGTTCTTACCTGCTGAAAAGCAAGTTGTGACGGCCAATCCAGATATAAACACTGTTGAGCTTTGTGAGGATGATGATTTTCT TGTTCTAGCATGCGATGGAGTATGGGATTGCATGTCAAGTCAGCAACTGGTAGACTTTATTCACGAGCAATTGCACTCGGAAACTAAGCTATCAGCCGTG TGCGAGAGAGTACTCGATAGATGTTTGGCACCATCAACAGCCGGCGAGGGATGTGACAACATGACAATGATCTTGGTGCAGCTTAAGAAACCCGTGGCGA CGAGTAGCTCCGCCGCAGACGAGAAAACCTCCTCTGAACCTGTTACTGTCAACCCCGAACCCATTTCATCCGAGCCTATGCCCGAGTCGACTAGACCCGC AGGCAGTGAATGA
AA sequence Show only first row Show all	>Lus10003423 pacid=23164883 polypeptide=Lus10003423 locus=Lus10003423.g ID=Lus10003423.BGIv1.0 annot-version=v1.0 MGIYLSSPKTEKFSEDGENAKLRYGLSSMQGWRATMEDAHAAFPDLDASTSFFGVYDGHGGKVVAKFCAKFLHQQVLKHEAYIAGDIGTSLQKSFFRMDE MMRGQRGWRELAVLGDKINKFSGMIEGLIWSPKAGENSEQHDDWAFEEGPHSDFSGPTSGSTACVAVIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKP DLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQVVTANPDINTVELCEDDDFLVLACDGVWDCMSSQQLVDFIHEQLHSETKLSAV CERVLDRCLAPSTAGEGCDNMTMILVQLKKPVATSSSAADEKTSSEPVTVNPEPISSEPMPESTRPAGSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31860			Protein phosphatase 2C family ...		Lus10003423 [exp]	0	1
AT2G24300			Calmodulin-binding protein (.1...		Lus10019056 [exp]	1.0	0.9102
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	2.0	0.9068
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	6.5	0.9074
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	7.6	0.9092
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10030323 [exp]	8.7	0.8695
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	11.0	0.9002
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	12.2	0.8476
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	14.9	0.8540
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	18.3	0.8894
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	18.3	0.8890

Compare expression of checked genes

Lus10003423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.