Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31850 1373 / 0 PGR3 proton gradient regulation 3 (.1) AT3G06920 347 / 3e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 349 / 5e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 308 / 7e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 276 / 5e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 274 / 8e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 273 / 3e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12100 268 / 3e-76 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G06710 270 / 6e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 261 / 5e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026884 [exp] 1018 / 0 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 357 / 7e-108 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 324 / 1e-95 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 323 / 3e-95 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 297 / 1e-84 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 290 / 9e-84 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 291 / 1e-81 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 287 / 3e-81 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 286 / 9e-81 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264800 [exp] 1531 / 0 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G368700 [exp] 341 / 3e-100 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 336 / 4e-100 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 330 / 6e-97 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 317 / 4e-92 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 294 / 1e-84 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 287 / 3e-84 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 286 / 7e-84 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 277 / 3e-79 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 268 / 5e-78 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003424 pacid=23164892 polypeptide=Lus10003424 locus=Lus10003424.g ID=Lus10003424.BGIv1.0 annot-version=v1.0 ATGGATGTGAAGAGGAAAGTCAGAAATCGAGTTTCCTCTGACGATGTTATGAGCTTTCTTAGTTCAACTTCGGACTTAAGTGCGGCATTCTCCTACTTCA ATTCGGTTTCAAAGCTTCCTACTGTGGTTCACACCACTGGAACATGTAATTTAATGCTTGAGCTCTTGAGGGTTCACGGAAGGGTGGAGGACATGGTTAA TATATTCGATTTGATGCAGAAACAGATCATAAGGAGGGATGTCGAAACTTATTTGACTGTATTCAAGGCCCTGAATATAAGAGGTGGGCTCAGAAAAACA CCATTTGCGCTGGAAAAAATGAAGGAAGTAGGGATTGTTTTGAATGGTTACTCCTACAATGGCCTGATCTACTCGCTACTTCAATCCGGTCTTGGTCGAG AGGCTCTAGAGGTGTATAGACGAATGGTTTCAGAAGGTCTGAAACCAAGCCTTAAGACGTATTCCGCTCTTATGGTAGCATTGGGGAAGAGAAGGAACAT AGAAGGAGTGATGGATTTGTTGGAAGAGATGGGGCGTTTAGGATTGAGACCAAATGTTTACACATACACCATATGCATTAGAGTGCTCGGAAGAGCTGGA AAAATTGACGATGCATTCAGGTTAATGAAGAGAATGGATGATGAGGGCTGTGGACCTGATGTTGTTACTTATACAGTTCTTATCGATGCTCTCTGTACCG CAGGCAAGCTAGACAAAGTTGCAGAATTGTTCTCACAGATGAAGGCTACTAGTCACAAGCCTGACCGAGTAACCTATATCACCTTGTTGGACAGATACAG TGATTGCGGAGACATAGATATGGTAAAAAAGATTTGGAATGAAATGGAATCTGATGGTTATGCTCCTGATGTAGTTACTTTTACAGTGCTGGTCAATGCT TTATGCAAAGCACACAATATAGATGAAGCATTTCATACATTAAATGTCATGAGAAAGCAAGGCATTCTGCCGAATCTTCATACTTACAATACTTTGATAT GTGGACTATTGAGGGTGAACAGGGTTGCAGATGCACTGGATATATTTAAGGATCTGGATACTTTTGGTGTTAAGCCTACAGCTTATACATACATCCTTTT CATAGATTACTATGGGAAATCTGGTGACTCTAGTAAGGCGCTTGAGACCTTTGAGAAAATGAAGCTTAGTGGCATTGCTCCCAACATTATTGCTTGTAAT GCATCTCTATATAGTCTTGCTGAAAGTGGTAGGCTAGTGGAGGCAAAAGCTATTTTCAATGAGCTGAAAAGAAGTGGCCTTGTTCCAGATTCAATAACCT ACAACATGATGATGAAGTGCTACAGTAACGCAGGAAAAGTGGATGAAGCTATTAACTTACTACCCGAGATGGTGGAGAATAACTATGAACCTGATGTCAT GGTAATTAATTCATTGATTAACTCTCTTTACAAGGCCAATCGAGTGGATGAGGCATGGGAAATGTTCTGCAGAATGAAGGACATGAAACTTGCTCCTACT GTCGTGACTTACAACACATTGCTATATGGGCTGGGGAAAGAGGGTAAAGTCCAGAATGCCATTGAATTGTTTGAGAGTATGACGGCACAGGGGTGTGCTC CAAACACAGTGACCTTCAATACTCTCCTGCATTGCCTTTGCAAGAATGATGAGGTTGATATAGCCTTGAAGATGCTGTATAAAATGAGTGCTGTCAATTG TGGACGTGATGTTCTCACTTTCAACACCGTAATTCATGGATTCGTTAAAGCAAATAGAGTAAATGATGCGATTTGGCTCTTCTATCAAATGAAGAAGTTT CTTATGCCTGATGAAATTACTTTGTGCACCCTTCTTCCTGGTATTGTAAAGGATGAGCAGTATGAAGGAGCTTTTAAGATTGCAGAGGACTATGTCCAGC AGGTTGGATCTCAGATGAACAGTTCATTCTGGGAAGATCTGATGGAAGGCATAGTCACTGAAACCGGCACAGAGAAAGCTATTTCATTTGCTCAAAGAGT TGCAAGTGTTAGACTCTGCCCGGATGACTCCATTTTATTTCCTGTAATAAAAGTTCTCTGTAAGCGTGGGAAAGCATCTGCAGCACAAAGTGTGTTTTCA ACCTTCACAAAGGAGCTGGGAGTCACGCCCACAAACAAATCATACTACTGTCTGATTAATGGTCTGCTTACGGTGGGTGACGATGACATGGCTTGGAATC TATTTGAGCAAATGAAGGCTGTGGGTTTATCTCCTGATATACTCATCTATAACAAGTTACTTAATGCTCATGGGAAGCGTGGCAACATTGATGAGCTCTT CGAACTATACAACGAGATGCTTTCTAGAGGATGCAAGCCAATTGATATAACCCACAACATAGTCATCTCCAACCTTGCGAAAGCCAAATGCGTTGACCAA GCCATGGACTTGTTCTATGATCTCGCAAGTAATGGTGAGTTCACACCCACTCCTTGCACCTATGGCCCTCTTATAGATGGACTCTTAAAGGGCGGCAGAA TCGAAAAGGCCAAACAGCTGTTCGAGGACATGGTGGAATATGGCTGCAAGCCTAATTGTGCTGTTTACAACATTCTTATGAACGGTTTGGGGAAAGTTGG TGACGTGAATGCTGCCTGTCAATTGTTTCAAAGGATGGCAAGAGAGGGAATACGACCAGACTTGAGAACTTATTCCATTCTCGTTGACAGCCTATGCATG GCAGGGAGAGTGGATGAAGCTCTGCACTACTTTGAGGAGTTAAAGCAAAGTGGTATAGATCCGGACCTAATCGCATACAACTTGATTATTGATGGTCTGG GAAGATGTGGCAAGATAGAAGAAGCTCTCGTAATGTTTGAAGAAATGAGAAATAGAGGTCTGACCCCTGATCTTTACACATACAACGCCTTAATTCTCTA TCTAGGAATTGGCGGAATGGTAGAAGAAGCAAAACAGATGTATGAAGAGCTTGAAACGGTGGGTCTCGAGCCTAACGTATACACTTACAATGCGCTGATT CGGGGTTACAGTATGTCTGGAAGTTCGGATCTTGCGTATGCTGTCTACGAGAAGATGATGGTCGGAGGCTGCAGTCCCAACGATGGAACGTTCGCTCAGC TCCCGAATCCTTCATGA
AA sequence Show only first row Show all	>Lus10003424 pacid=23164892 polypeptide=Lus10003424 locus=Lus10003424.g ID=Lus10003424.BGIv1.0 annot-version=v1.0 MDVKRKVRNRVSSDDVMSFLSSTSDLSAAFSYFNSVSKLPTVVHTTGTCNLMLELLRVHGRVEDMVNIFDLMQKQIIRRDVETYLTVFKALNIRGGLRKT PFALEKMKEVGIVLNGYSYNGLIYSLLQSGLGREALEVYRRMVSEGLKPSLKTYSALMVALGKRRNIEGVMDLLEEMGRLGLRPNVYTYTICIRVLGRAG KIDDAFRLMKRMDDEGCGPDVVTYTVLIDALCTAGKLDKVAELFSQMKATSHKPDRVTYITLLDRYSDCGDIDMVKKIWNEMESDGYAPDVVTFTVLVNA LCKAHNIDEAFHTLNVMRKQGILPNLHTYNTLICGLLRVNRVADALDIFKDLDTFGVKPTAYTYILFIDYYGKSGDSSKALETFEKMKLSGIAPNIIACN ASLYSLAESGRLVEAKAIFNELKRSGLVPDSITYNMMMKCYSNAGKVDEAINLLPEMVENNYEPDVMVINSLINSLYKANRVDEAWEMFCRMKDMKLAPT VVTYNTLLYGLGKEGKVQNAIELFESMTAQGCAPNTVTFNTLLHCLCKNDEVDIALKMLYKMSAVNCGRDVLTFNTVIHGFVKANRVNDAIWLFYQMKKF LMPDEITLCTLLPGIVKDEQYEGAFKIAEDYVQQVGSQMNSSFWEDLMEGIVTETGTEKAISFAQRVASVRLCPDDSILFPVIKVLCKRGKASAAQSVFS TFTKELGVTPTNKSYYCLINGLLTVGDDDMAWNLFEQMKAVGLSPDILIYNKLLNAHGKRGNIDELFELYNEMLSRGCKPIDITHNIVISNLAKAKCVDQ AMDLFYDLASNGEFTPTPCTYGPLIDGLLKGGRIEKAKQLFEDMVEYGCKPNCAVYNILMNGLGKVGDVNAACQLFQRMAREGIRPDLRTYSILVDSLCM AGRVDEALHYFEELKQSGIDPDLIAYNLIIDGLGRCGKIEEALVMFEEMRNRGLTPDLYTYNALILYLGIGGMVEEAKQMYEELETVGLEPNVYTYNALI RGYSMSGSSDLAYAVYEKMMVGGCSPNDGTFAQLPNPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	0	1
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	1.4	0.9500
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	2.0	0.9471
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	2.4	0.9489
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	5.7	0.9473
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	6.3	0.9462
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10029195 [exp]	6.5	0.9345
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	6.9	0.9451
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	8.8	0.9208
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	8.8	0.9352
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	9.0	0.9424

Compare expression of checked genes

Lus10003424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.