Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 51 / 5e-07 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 47 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) AT2G25010 47 / 1e-05 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 46 / 3e-05 Aminotransferase-like, plant mobile domain family protein (.1) AT1G51538 45 / 6e-05 Aminotransferase-like, plant mobile domain family protein (.1) AT5G51100 44 / 9e-05 FSD2 Fe superoxide dismutase 2 (.1) AT4G25100 42 / 0.0002 ATFSD1, FSD1 ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, Fe superoxide dismutase 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027047 [exp] 304 / 1e-99 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 291 / 1e-95 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10011950 [exp] 172 / 2e-51 ND 40 / 0.001 Lus10008761 [exp] 152 / 2e-42 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004818 [exp] 144 / 4e-40 AT1G17930 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10032693 [exp] 119 / 2e-33 AT2G25010 52 / 3e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10001981 [exp] 109 / 7e-28 AT1G17930 61 / 2e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012081 [exp] 108 / 2e-27 AT1G17930 53 / 8e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10024265 [exp] 92 / 3e-21 AT1G17930 59 / 9e-10 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110400 [exp] 41 / 0.0007 AT5G51100 335 / 3e-115 Fe superoxide dismutase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10003430 pacid=23164880 polypeptide=Lus10003430 locus=Lus10003430.g ID=Lus10003430.BGIv1.0 annot-version=v1.0 ATGATGACGAGGATGAGGGCCCACCTTCGGGGTTTGAGTACGAGGACACACCGACTTCACCGCACACGGCTTCTCCGCACTTCGCTTCTACAGGCTCGTC ATATGCCTCCGCGAGTGTTGGCGTTAGAGGAGGGAAACCTAGCTGACTGGCGAGGGTACGTGAGGAGGAGGCTGCCACTGGAGTGGACTGGGAGGGACTC AGTCGTACTTGGGAGTTTACTGCGGGCTTCCAGATGGTGGACCGATGAGGCCGACAGTGATCCCAGCTTTGGCGGTCACATTGCACATTACATGTGGCAG TCTGGAGAGGGATACAGGGATTTGAAGAGCTTAAGGTTCCTGAAGCGCCCTAAACAATGGGACACGGTGAGCGACTTTGCCATCCAGACAAAGACGGTTT GGCCGATCATGCAGGAGTCGAAACTTTTTCACTTGGGACAGTGCATGTCGACCCACTTTAATGAGCCTCTTCTCGAGGCATTTGTTGAGAGGTGGCAGCC CGATACGAACACCGTTCACATGCCGAGTGGGGAGATGACGATCATTTTACACGACGTCTTCCACATTCTCCGGGTCCTGGTGGCTGGAAGATCATTTCAT AAACCCCGAGCTCTTGTTGATTTGAGGGCGGGTGTAGCTGAGTTGCTTGGGTTTGGGTCTGCTGCTGCTTTGGAGCGCCCGGTTAGAGGTGAGACTGTCG ACCCACCGCTATACGATCACGACGTCATGTACGAGAAGGATATGATCTCGATCGGCAAGCATATGGGGGATGAGACTGCTTATAAGAATCGACGGCCTGA GTATATATCGACCTTTATGGAAAAGCTGGTGTCATGGAAAGCAGTGAGTTGGAGGCTTGAAGCTGCAAAAGCTCGAGCATCTAAGAGAGAAGAAGAAGAA GAGGGGAAGAGGAGGGAAGAAAAGGAGGATATCTTAGGTACCGGGAAACCTGTGGAGATGTGTGCTGATAGTGATGAAAAAGAATAA
AA sequence Show only first row Show all	>Lus10003430 pacid=23164880 polypeptide=Lus10003430 locus=Lus10003430.g ID=Lus10003430.BGIv1.0 annot-version=v1.0 MMTRMRAHLRGLSTRTHRLHRTRLLRTSLLQARHMPPRVLALEEGNLADWRGYVRRRLPLEWTGRDSVVLGSLLRASRWWTDEADSDPSFGGHIAHYMWQ SGEGYRDLKSLRFLKRPKQWDTVSDFAIQTKTVWPIMQESKLFHLGQCMSTHFNEPLLEAFVERWQPDTNTVHMPSGEMTIILHDVFHILRVLVAGRSFH KPRALVDLRAGVAELLGFGSAAALERPVRGETVDPPLYDHDVMYEKDMISIGKHMGDETAYKNRRPEYISTFMEKLVSWKAVSWRLEAAKARASKREEEE EGKRREEKEDILGTGKPVEMCADSDEKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10003430 [exp]	0	1
					Lus10005187 [exp]	3.2	0.9486
					Lus10002152 [exp]	4.5	0.9486
AT3G60630	GRAS	ATHAM2, LOM2	LOST MERISTEMS 2, ARABIDOPSIS ...		Lus10012237 [exp]	5.4	0.6615
					Lus10010117 [exp]	5.5	0.9486
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	6.3	0.9486
AT3G14470			NB-ARC domain-containing disea...		Lus10040208 [exp]	6.5	0.6928
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	7.1	0.9486
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	7.7	0.9486
					Lus10039750 [exp]	8.4	0.9479
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	8.9	0.9154

Compare expression of checked genes

Lus10003430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.