Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12700 397 / 1e-129 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63080 383 / 1e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 372 / 3e-121 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 369 / 5e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 366 / 5e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 363 / 8e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 363 / 1e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 359 / 3e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 358 / 7e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 355 / 2e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014245 [exp] 1071 / 0 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 1028 / 0 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 723 / 0 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008593 [exp] 681 / 0 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003427 [exp] 658 / 0 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014242 [exp] 657 / 0 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022861 [exp] 617 / 0 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 546 / 0 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 538 / 0 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038400 [exp] 497 / 6e-170 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 491 / 1e-167 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 484 / 5e-165 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 478 / 7e-163 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 479 / 8e-163 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 476 / 1e-161 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 476 / 2e-161 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 474 / 6e-161 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 471 / 3e-160 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 470 / 1e-159 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003433 pacid=23164862 polypeptide=Lus10003433 locus=Lus10003433.g ID=Lus10003433.BGIv1.0 annot-version=v1.0 ATGGCGAAGTTTCCCTATTCCTCTCATCTCCGTTCCAATTGGACTACTGCCATTCGTACCTCCGATTCTCCGCCTTTCACTACCATCAAAGGAGCTTTGG ATTCTTTTAATAGGATGCTCTGCTTGAATCCCAGACCTCCCGCTGCAAAATTTTGTCAGATATTTGCATTTCTTGCGAAGATGAATGCTTATGAAGCTGC TGTTTCTGTATCTAGGCGAATGGATTCCGTTGGGTCGGTATTTGATCTTTTCAAATTTAATGCATTGATTCGTTGCTTCTGCAAATTGGGTCGTGTTGGT TTTGCATTCTCAGTATTGGGAAAAATATTTAAACTTGGTCATCAACCTAATGTGGTCACTTTTAATATCTTGATTGATGCATTATGCAAAGATGGAAAAG TTGCTCATGCTGCAAATTTGATGGATAAGATTGTTTCTTTAGGATTTCAACCAGATGTTATCACTTATAATTCTATCATCAATGGCCTGTGTAAGATGGG TGAAACTAGTGCTGCTCAGAGATTGCTGGAGAAAATGGAAGATGGAGGTTGTCAACCAGATGTGGTTACTTACAGTACAGTTATAAATAGCCTATGTAAG GATGGGTTGATATCTGAAGCCTTAGATGAGTTTTACAAGATGAAGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTATATTGTTGTTCGGTGAAATGTTAGAAAGGAA TGTCATTCCTGATGTAGTCACCTATAACATTCTGATCGATTCTTTTTGCAAAGATGGAATGGTCCATGAGGCTAAAGCTTTTGTCAAAGTGATGATGCAA AAAGGACAGCATCCGGATATCGTCACTTACAATTCATTACTGGATGGGTATTGTTTGCGTAATGAATTAGACAAAGCTCGTAACTTGTTCAATTCTTTAG GTAGCATGGAATGCGAGCCGGGCGTTCATACTTATACTATGATGATTAATGGATATTGTAAGAGTGGGAGGGGGAGTGAAGCCAAACAGTTGTTGAATGA TATGATTAAGAAGGATTTAGTTCCAGACACGGTTACGTATACTACTCTCGTGGATGGGTTTTGCCGAGCAGGGAGGTTCAAAGATGCAGAAACGGTTTTA AAGGAAATGTGCCATCATGGACAGCTTCCGAATGTCGTGACATACAACAGTTTGCTAAATGGTTGGTGCAAAATAGGTCATCTGGACAAGGCATTAGCTC TATTCCAAGAAATAAAAAGTAGTCGGTTGAAGCCTGATGTTGTCATGTATAATATTCTTATTGACAGTTTGTGGAAAGCAGGAAGGGGTAAGGAAGCAAG GGACATGTTTTCTGAGCTCTCTAAAGAAAGGGATTTACAACCTAATTCCTCCACATACAACACAGTAATTGATGGACTTTGTAGGCATGGTTTAGTAGAT GAGGCATATGATTTGTTTAGAACAATGGAGAGAAGTATATTCCCGCCAGATATTTGCACTTATAATGTGATCATCCATGGATTTCTTCGATATAAAGATC CACTTGAAGCAGTAGAGCTAATTCAAGAGATGGTGAATAAGGGCTTCTCAGCTGATGCAACCACATTAGCCTTGCTGATAGAATTGTTGCCCAAAAACCA GCTAGATCATCCACTTTGGAGAAAGCTCTTAGGTGATTCTTATGTGGATAGAGAAGAGATTAGGTCTGAGGGTATATCAGCAGAAAAAACCTCAAAAGAT TAG
AA sequence Show only first row Show all	>Lus10003433 pacid=23164862 polypeptide=Lus10003433 locus=Lus10003433.g ID=Lus10003433.BGIv1.0 annot-version=v1.0 MAKFPYSSHLRSNWTTAIRTSDSPPFTTIKGALDSFNRMLCLNPRPPAAKFCQIFAFLAKMNAYEAAVSVSRRMDSVGSVFDLFKFNALIRCFCKLGRVG FAFSVLGKIFKLGHQPNVVTFNILIDALCKDGKVAHAANLMDKIVSLGFQPDVITYNSIINGLCKMGETSAAQRLLEKMEDGGCQPDVVTYSTVINSLCK DGLISEALDEFYKMKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILLFGEMLERNVIPDVVTYNILIDSFCKDGMVHEAKAFVKVMMQ KGQHPDIVTYNSLLDGYCLRNELDKARNLFNSLGSMECEPGVHTYTMMINGYCKSGRGSEAKQLLNDMIKKDLVPDTVTYTTLVDGFCRAGRFKDAETVL KEMCHHGQLPNVVTYNSLLNGWCKIGHLDKALALFQEIKSSRLKPDVVMYNILIDSLWKAGRGKEARDMFSELSKERDLQPNSSTYNTVIDGLCRHGLVD EAYDLFRTMERSIFPPDICTYNVIIHGFLRYKDPLEAVELIQEMVNKGFSADATTLALLIELLPKNQLDHPLWRKLLGDSYVDREEIRSEGISAEKTSKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003433 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003427 [exp]	1.0	0.9050
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10003429 [exp]	5.5	0.8151
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10018991 [exp]	10.6	0.8198
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014244 [exp]	20.8	0.7747
AT1G27590			unknown protein		Lus10028228 [exp]	22.6	0.8451
AT1G27590			unknown protein		Lus10007229 [exp]	26.9	0.8404
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10008601 [exp]	27.4	0.8091
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10020011 [exp]	28.1	0.8177
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028674 [exp]	35.9	0.8108
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	54.5	0.7937

Compare expression of checked genes

Lus10003433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.