Plant FIBer expression Database

Lus10003434 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25080 61 / 9e-12 Sas10/Utp3/C1D family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026882
[exp]
108 / 5e-30 AT5G25080 218 / 4e-72 Sas10/Utp3/C1D family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G264700
[exp]
76 / 1e-17 AT5G25080 225 / 9e-75 Sas10/Utp3/C1D family (.1)
Potri.018G018100
[exp]
76 / 2e-17 AT5G25080 223 / 6e-74 Sas10/Utp3/C1D family (.1)
PFAM info
Representative CDS sequence
>Lus10003434 pacid=23164895 polypeptide=Lus10003434 locus=Lus10003434.g ID=Lus10003434.BGIv1.0 annot-version=v1.0
ATGGATGGTATGTTAAGGTATGAACTGCCTTTCCTTGTTGATTTGTTGCATGAACTGATGGTTGACATTTTCGATATTTTTGTTGGGGTACTCCATACGC
CTCCCGTTCCTCGTAACGGTTTCATTGCCTTGCTGGCTATTCTTGATAGGTTGGGTATCAAGCATCAATTGGATGTCTCGAGCATGGGAATGGAGCTGAC
AGCCCTGAAACTGGCCAGGGATTTCGCCTTCCAGATTGTTTCCCTTGCTGATCCAGATGTTATTTCTGAGATGCCTCCTTTGGAGAGAGCTCAATCTCTG
CTAATGGTCGCTAAGGCCACAACCATTCTCTTTGCATATGACCATCCCGCCAAGGCAGAGCTGGATAGAATCAACTTGTATGAAAAGAAGCTGGAGCGGC
TCATGGATTTGAGTAAAGGTTCTTTCTTGTTTTATGGTTTCTTATGCAACTCTCTTACTTTTCTGGAAACTGGTTATCTGGATTTGATTCTTAATGGATA
A
AA sequence
>Lus10003434 pacid=23164895 polypeptide=Lus10003434 locus=Lus10003434.g ID=Lus10003434.BGIv1.0 annot-version=v1.0
MDGMLRYELPFLVDLLHELMVDIFDIFVGVLHTPPVPRNGFIALLAILDRLGIKHQLDVSSMGMELTALKLARDFAFQIVSLADPDVISEMPPLERAQSL
LMVAKATTILFAYDHPAKAELDRINLYEKKLERLMDLSKGSFLFYGFLCNSLTFLETGYLDLILNG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G25080 Sas10/Utp3/C1D family (.1) Lus10003434
[exp]
0 1
AT1G55080 MED9 unknown protein Lus10003788
[exp]
10.7 0.6727
AT3G25840 Protein kinase superfamily pro... Lus10021688
[exp]
13.3 0.6876
AT3G04160 unknown protein Lus10042519
[exp]
21.5 0.6716
AT5G40600 EMB1875 unknown protein Lus10003647
[exp]
24.2 0.7099
AT2G06005 FIP1 FRIGIDA interacting protein 1 ... Lus10021558
[exp]
36.9 0.6722
AT1G62930 RPF3 RNA processing factor 3, Tetra... Lus10014247
[exp]
69.0 0.6184
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Lus10007300
[exp]
70.3 0.6237
AT5G02130 NDP1 Tetratricopeptide repeat (TPR)... Lus10010858
[exp]
78.6 0.6161
AT2G17020 F-box/RNI-like superfamily pro... Lus10022651
[exp]
81.5 0.6157
AT3G58470 nucleic acid binding;methyltra... Lus10005597
[exp]
96.4 0.5687

Lus10003434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.