Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18270 306 / 7e-103 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT3G04060 299 / 4e-100 NAC ANAC046 NAC domain containing protein 46 (.1) AT5G61430 272 / 2e-89 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G07680 270 / 1e-88 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G39610 251 / 5e-82 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT3G29035 249 / 5e-81 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT5G53950 246 / 9e-79 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 241 / 2e-77 NAC ANAC058 NAC domain containing protein 58 (.1) AT3G15170 233 / 2e-74 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G24430 231 / 8e-74 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026879 [exp] 583 / 0 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10001648 [exp] 258 / 6e-84 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1) Lus10021659 [exp] 258 / 7e-84 AT5G61430 361 / 8e-125 NAC domain containing protein 100 (.1) Lus10005537 [exp] 249 / 9e-81 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020165 [exp] 244 / 1e-77 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10026966 [exp] 240 / 2e-76 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10009669 [exp] 236 / 4e-75 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10038937 [exp] 234 / 5e-75 AT3G18400 268 / 5e-89 NAC domain containing protein 58 (.1) Lus10027227 [exp] 233 / 1e-74 AT3G18400 275 / 1e-91 NAC domain containing protein 58 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054200 [exp] 323 / 1e-108 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.019G031600 [exp] 320 / 1e-107 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.012G001400 [exp] 270 / 3e-88 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.015G020000 [exp] 264 / 5e-86 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1) Potri.017G086200 [exp] 256 / 8e-83 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.011G115400 [exp] 244 / 3e-78 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.012G056300 [exp] 239 / 6e-77 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.015G046800 [exp] 238 / 1e-76 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.001G396300 [exp] 236 / 1e-75 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.018G003800 [exp] 235 / 9e-75 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10003435 pacid=23164891 polypeptide=Lus10003435 locus=Lus10003435.g ID=Lus10003435.BGIv1.0 annot-version=v1.0 ATGGAGGAGCCAGCCGTGTCGAACACAGGCGACGAAGTGCTCGATTTGCCGCCTGGATTCCGATTCCATCCCTCCGACGAAGAGATCGTCACTCATTACC TTACCGAGAAGGTCAAGGACTCCAACTTCACAGCTATTGCCGTCGGAGAAGCCGACCTCAACAAGTCCGAGCCCTGGGACCTACCCTGCAAAGCGAAGAT GGGGGAGAAGGAGTGGTACTTCTTTTGTCAGAGGGACAAGAAGTATCCGACCGGGATGAGGACAAACCGAGCGACAGTGGCCGGATACTGGAAGGCGACG GGTAAAGATAAGGAGATATTCAGAGGGAGAGGATGTCTCGTGGGGATGAAGAAGACTCTCGTTTTCTACAGAGGTAGAGCTCCCAAAGGCGAGAAAACTA ACTGGGTTATGCACGAGTTCCGCCTGGAGGGAAATTTCTCTTACTACTCCTTCCCCAAAGCTTCTTCCAAGGATGAATGGGTTGTGTGTAGAGTGTTTCA CAAGAGCCCGGCAGCATCAGCAGTATCGTCATCATCTGGAGGAGGAGTGATGATGAAGAGAACTTCTCCCGTGGAAGAGCTGATGAGGCCGGCGTCTAAT TCTTTCGGCGACGATTTCTTCGATTGCTCCTTATCTCTCCCGCCGTTGATGGATCTTCCGTACGCCGATAGCGTACTCAACGACTTCGCCAAACAGTTGC CTAATTCCAATAATTGCAACAATACCTTCACCAACCACCACCACCTTACTTCTTCCAATTCACCTTATATCGGCGGCAGCGGCGCTGGCAGAGGTGGCGT CCAGCTGTACACGTTTCCGACTACGGCGGGGGCGGGGTACTTGCACCGAGGAGGATTTGGGCATGAGTGCAAACTGGAGCAGCAGCAGTCAATGGTCAGC CTGTCGCAAGACACGGGGTTGAGCACGGACAATATGAACGCGGCGCCGGAAATCACGTCCAAGCAATTGGGAATAGGAATTAGCGGCGGAGGAGGAGAGG ACCCGTCGACGTCGGCGGGTGGGTCCACGTCGGGAATGGTGGAATTGGACTCTTTCTGGGACAATTACTGA
AA sequence Show only first row Show all	>Lus10003435 pacid=23164891 polypeptide=Lus10003435 locus=Lus10003435.g ID=Lus10003435.BGIv1.0 annot-version=v1.0 MEEPAVSNTGDEVLDLPPGFRFHPSDEEIVTHYLTEKVKDSNFTAIAVGEADLNKSEPWDLPCKAKMGEKEWYFFCQRDKKYPTGMRTNRATVAGYWKAT GKDKEIFRGRGCLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGNFSYYSFPKASSKDEWVVCRVFHKSPAASAVSSSSGGGVMMKRTSPVEELMRPASN SFGDDFFDCSLSLPPLMDLPYADSVLNDFAKQLPNSNNCNNTFTNHHHLTSSNSPYIGGSGAGRGGVQLYTFPTTAGAGYLHRGGFGHECKLEQQQSMVS LSQDTGLSTDNMNAAPEITSKQLGIGISGGGGEDPSTSAGGSTSGMVELDSFWDNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10003435 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	3.0	0.9725
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	3.7	0.9653
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10014066 [exp]	3.9	0.9543
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	6.3	0.9606
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	7.1	0.9630
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	7.1	0.9647
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	8.7	0.9645
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	10.1	0.9629
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	10.2	0.9616
AT1G64820			MATE efflux family protein (.1...		Lus10009140 [exp]	10.5	0.9424

Compare expression of checked genes

Lus10003435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.