Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 848 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 791 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 778 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G24720 758 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 722 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 703 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11210 647 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 645 / 0 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT1G42540 493 / 1e-159 ATGLR3.3 glutamate receptor 3.3 (.1) AT5G11180 491 / 2e-159 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020109 [exp] 1274 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 1203 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026235 [exp] 1110 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 952 / 0 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10027171 [exp] 483 / 2e-155 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 478 / 1e-153 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 474 / 3e-152 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 466 / 4e-149 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10026553 [exp] 434 / 3e-137 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012100 [exp] 993 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 978 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 969 / 0 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 967 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G270400 [exp] 930 / 0 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.018G013000 [exp] 923 / 0 AT2G29120 908 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268200 [exp] 922 / 0 AT2G29120 841 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268900 [exp] 919 / 0 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1) Potri.018G011500 [exp] 917 / 0 AT2G29110 793 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268400 [exp] 917 / 0 AT2G29110 835 / 0.0 glutamate receptor 2.8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10003436 pacid=23164878 polypeptide=Lus10003436 locus=Lus10003436.g ID=Lus10003436.BGIv1.0 annot-version=v1.0 ATGACACCGGAAAGTGGTAATCTTTTACTTTTGTTCATCAGCATGACCCTTTTGGCTGCACCTCATTCCTTAATTATGAACCACAGCAGTGCGGCGTCGC CGATGGCGGGGCAGAGTAACGCGACGGTTGCAGTGAAGATTGGAGTGATTCTTGACTTGAACGCCGGCGACGACAACCTTGTTGGCCGAGTTGGGTTTAG CTGCATTCAAATGGCAGTTGCCGATTTCTACGCAGCTCGTCCAAATTACACCACCCGCCTCGTCATCCATCCCCGGGATTCTCCCTGTGAGGACGTCGTT CAGGCTGCTGCTTCAGCGGTTGATTTGATAAAGAACGTTAAAGTGCAAGCAATCTTGGGCCCAGAAACGTCCATGCAAGCCCATTTCATCGTAGCTCTTG GGGAAAAGGCTCAAGTTCCAATCATCTCATTCTCGGCATCAAGCCCCGCCATCGATGCTTCCAATCACAACCCTTACTTCTTCCGCGCTAATCCAACGGA CTCCGTTCAAGCAAATGCCATAAGCGCCATCGTTAAAGCCTTTGGATGGAGGCAAATTGTACCAATCTACACTAACAATGATTTTGGTAACGGGATCATA CCTCACTTGGTCGACGCTCTTGAAGCTGTCGATGCCCGTGTCCCACATCGTGTCGGGATTCCCCCGTCCGCTACGGACGATTTCATCGGTGAAGAGCTTT ACAAGCTCATGACAATGCAAACTAGAGTATTCGTCGTGCACATGAATCCCAATATGGGAGCTAGGCTCTTCGCCAAGGCTAGACAAGCCGGCATGATGAA ATCGGGTTACGTGTGGATCGTGACGGATGGAATCACCGCTTTCTTGAATTCCATGGATCGTTCGGTTCTCGAGTCAATGCAAGGTGTCGTCGGTATCAGA CCTTACGTGCCAGCAACTAGAGAAGTTATCGGTTTTCGAAGACGGTGGAAGAAGAAGTTGTACCGGGAGCGTCCAGAAGAATTGATGGGTCCTCGCCGCG AACTCAACAGTTACGGATTGTGGGCATATGATGCTACAACAGCACTAGCCATGGCAGTTGAGAATATTCATACAAAACCTGGTCTTGAAAGGTTAGGGGT GTTTAGTACAGACGGTCCAACACTGGCTCGTGAGCTATCACGAACGAGGTTCAAAGGACTGAGTGGAGATTTTGTATTTGAAAAGGGGCAGTTGATAGCT TCAACGTATGAGATAGTGAATGTGATTGGTAATGGATTAAGACGGATTGGGCTTTGGTCTTCTAAACATGGGCTCGGAAAGAAGAATGGGCCAGTAATCA TATGGCCAGGGGAAACAACTTGGGCTCCGAAAGGGTTTGAGATCCCGACAAATGGGAAGAAGTTGAGGATAGGAGTGCCTGTGAAGCATGAATTCTTCGA GCTGGTTAATGTCAACAACAGTAGTGGCGTTACTACTGGGTACTGCATCGACATTTTTGAAGCTGTTGTCAAGGCACTGCCGTATGCACTTCCTATAGAG TATGTGCCATTTGCTAAACCTAATGGCGAAAGTGCCGGGAGTTACAATGACCTGGTTCACGAAGTCTTTTTAGGGAAGTTTGACGGTGCGGTGGGAGATA TAACCATACGAGCCAAGAGGTCGCTGTACGTTGACTTCACATTGCCGTACACAGAATCAGGAGTGGCAATGTTTGTACCAGTGAAAGAAAATGGAAGCAA GAATGCATGGGTGTTCCTGAAGCCATTGACATGGGATCTTTGGATAACCACATTTTTGTTCTTCGTTTTTATTGGGTTTGCGATCTGGGTTTTGGAGCAC AGGATCAATAACGATTTCAGAGGACCTCCTTCTTATCAAGCTGGAACTAGCTTCTGGTTTTCCTTCTCCACCATGGTGTTTGCCCACAGGGAAAAAGTAG TGAGTAACTTGACAAGGACGGTGATGATAATTTGGTGCTTGGTGGTTCTGATACTGACTCAGAGCTACACTGCGAATTTGACTAGCCTTCTCACAGTCCA GCAGCTTCAACCTACCATTACAAACATAAATGATATAAGGAAAGGGGACCCTATTGGGTTCCATGAGAAATCATTTGTGCAGGATATTCTAACACAATTG GGGTTCCGGAATCTGGTACCTTTCAATAGCTCAGATCAGTGTGACTCGCTTTTCTCCCAAGGAAGAATCGTCGCTGCATTGAACGAAGTCCCCTACGTGA AGCTCTTCCTAGCAAAGCATTGCTCCAAGTACACCATGATCGACCTACCTTATAAATCAGACGGCTTCGGATTCGTGTTCCCAAGAGGTTCTCCACTAGT TGATGACATTTCCAGAGCAGTTCTGAACGTAACTGACGGGGAGGGAATGTCGGAAATCAATCAGAAATGGTTAGACTCAAAGGGTAGGTGCCCCGATTAT TACTCGGGTGCATCAAGTACTTCTTCTGAGAGCGAGAAGCTTGGGTTAAATAGCTTCTGGAGCTTGTTTCTGATAGCTGGAGTTGCTTCACTTTCAGCAC TCTTCATTTTTGCATCCATGTTCGTTTACGAGCACAGGAATGTTCTGCTCGATGATTCGAATCATTCCTTATGGGGAAGGATACTGAATTTGATCAAGGC CTTCGACAACAAAGATCTCGAATGCCATACTTTTAGGACAGACAAGGATGGTGAGGTGAATCTCGCCAATATGAATAATGTGCAGCAGCAGCAGCAGCAA CAACAACAACAGAGCCCTTCCACCTACTCTGTGCAGCAGGAGGCGGATGCGGATCATACACCATCCCAGATGCCGCCTACTCCTTCTGATAACATGACAG CTCAAGAAGAAGATACAAGTGTGCCAAGTGATTCGCATCCAAATTGTGGGTGA
AA sequence Show only first row Show all	>Lus10003436 pacid=23164878 polypeptide=Lus10003436 locus=Lus10003436.g ID=Lus10003436.BGIv1.0 annot-version=v1.0 MTPESGNLLLLFISMTLLAAPHSLIMNHSSAASPMAGQSNATVAVKIGVILDLNAGDDNLVGRVGFSCIQMAVADFYAARPNYTTRLVIHPRDSPCEDVV QAAASAVDLIKNVKVQAILGPETSMQAHFIVALGEKAQVPIISFSASSPAIDASNHNPYFFRANPTDSVQANAISAIVKAFGWRQIVPIYTNNDFGNGII PHLVDALEAVDARVPHRVGIPPSATDDFIGEELYKLMTMQTRVFVVHMNPNMGARLFAKARQAGMMKSGYVWIVTDGITAFLNSMDRSVLESMQGVVGIR PYVPATREVIGFRRRWKKKLYRERPEELMGPRRELNSYGLWAYDATTALAMAVENIHTKPGLERLGVFSTDGPTLARELSRTRFKGLSGDFVFEKGQLIA STYEIVNVIGNGLRRIGLWSSKHGLGKKNGPVIIWPGETTWAPKGFEIPTNGKKLRIGVPVKHEFFELVNVNNSSGVTTGYCIDIFEAVVKALPYALPIE YVPFAKPNGESAGSYNDLVHEVFLGKFDGAVGDITIRAKRSLYVDFTLPYTESGVAMFVPVKENGSKNAWVFLKPLTWDLWITTFLFFVFIGFAIWVLEH RINNDFRGPPSYQAGTSFWFSFSTMVFAHREKVVSNLTRTVMIIWCLVVLILTQSYTANLTSLLTVQQLQPTITNINDIRKGDPIGFHEKSFVQDILTQL GFRNLVPFNSSDQCDSLFSQGRIVAALNEVPYVKLFLAKHCSKYTMIDLPYKSDGFGFVFPRGSPLVDDISRAVLNVTDGEGMSEINQKWLDSKGRCPDY YSGASSTSSESEKLGLNSFWSLFLIAGVASLSALFIFASMFVYEHRNVLLDDSNHSLWGRILNLIKAFDNKDLECHTFRTDKDGEVNLANMNNVQQQQQQ QQQQSPSTYSVQQEADADHTPSQMPPTPSDNMTAQEEDTSVPSDSHPNCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10003436 [exp]	0	1
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	2.0	0.8940
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10010503 [exp]	8.4	0.8360
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	10.8	0.8505
					Lus10007473 [exp]	16.2	0.7624
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017056 [exp]	16.7	0.8236
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012466 [exp]	17.0	0.8015
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10008483 [exp]	17.5	0.7326
AT1G48460			unknown protein		Lus10032738 [exp]	24.4	0.8452
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	29.5	0.8384
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10010710 [exp]	30.3	0.8335

Compare expression of checked genes

Lus10003436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.