Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08570 305 / 8e-105 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) AT2G33270 251 / 3e-83 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT5G61440 220 / 1e-71 ACHT5 atypical CYS HIS rich thioredoxin 5 (.1) AT4G29670 144 / 4e-42 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT4G26160 141 / 6e-41 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT3G51030 54 / 4e-09 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT5G16400 51 / 1e-07 TRXF2, ATF2 thioredoxin F2 (.1) AT1G69880 50 / 2e-07 ATH8 thioredoxin H-type 8 (.1) AT3G02730 49 / 4e-07 TRXF1, ATF1 thioredoxin F-type 1 (.1) AT5G39950 46 / 2e-06 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026878 [exp] 488 / 1e-176 AT1G08570 332 / 7e-115 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10002640 [exp] 332 / 9e-115 AT1G08570 320 / 2e-110 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10020254 [exp] 327 / 5e-113 AT1G08570 318 / 1e-109 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10019087 [exp] 213 / 2e-68 AT1G08570 223 / 4e-73 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10015711 [exp] 211 / 7e-68 AT1G08570 220 / 2e-71 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10007994 [exp] 156 / 2e-44 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10040554 [exp] 152 / 6e-43 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10028349 [exp] 56 / 8e-10 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10041799 [exp] 56 / 8e-10 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061200 [exp] 311 / 3e-106 AT1G08570 295 / 4e-100 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.019G031900 [exp] 307 / 5e-105 AT1G08570 325 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.006G150700 [exp] 154 / 3e-46 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.018G066500 [exp] 152 / 4e-45 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.007G018000 [exp] 57 / 3e-10 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.019G054800 [exp] 55 / 5e-09 AT3G02730 204 / 1e-67 thioredoxin F-type 1 (.1) Potri.005G232700 [exp] 53 / 8e-09 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.014G029200 [exp] 46 / 9e-06 AT1G07700 233 / 6e-78 Thioredoxin superfamily protein (.1.2.3) Potri.016G138800 [exp] 45 / 9e-06 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.002G066800 [exp] 45 / 1e-05 AT1G76760 192 / 2e-63 thioredoxin Y1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10003437 pacid=23164888 polypeptide=Lus10003437 locus=Lus10003437.g ID=Lus10003437.BGIv1.0 annot-version=v1.0 ATGGCGGATTTGTTGAACAAGTCGCATCTGTTCTCTTCTTCCTGGCGTGCTTCCTCCTGTTCTTCGTCCCGTAGTTACGAAAGCCACCAGCACGGCCAAA TCTGTGTCGCGGGGAAGAGTCGAAGCAGCAGGTTTAATGGTTTATCTCTGAAAGCGAAATCACAGACCGTTAGGTCGCATGCAGTGCCCTTTGGAGCCAG AAGAGGGCATCTTCGTCGAGCTTCTTCACTAAGGGCTCAGCTAATGAGTGGACGTATTGGTAATGTCCAAAAATGGTGGGAAAAGGGTTTGCAGTCGAAT ATGAAAGAGATAACTTCAGCTCGAGACCTTGTAGACTCTCTTTTGAATGCCGGAGATAAGCTGGTTGTCGTTGATTTTTTCTCCCCTGGCTGTGGTGGCT GCAAAGCTCTTCATCCCAAGATATGTCAACTGGCAGAGGGTAACCCAGATGTGCAGTTTCTTCATGTGAACTATGAGGAGCACAAATCCATGTGTTATAG TCTCAACGTTCATGTGCTGCCTTTCTTCCGGTTCTACCGTGGGTCGCAGGGTCGAGTATGCAGTTTTAGCTGCACCAATGCCACGATCAAGAAATTCAGA GACGCATTGGCGAAACACTCTCCGGACAGATGCAGCATTGGTCCAGTGAAAGGGTTAGAGGAGAAAGAGCTGGTTGCCCTAGCTGCTAACAGGGAACTCG ATTTCGCATACACACAGAAAAAGGTTCATTCAGTTCCTGATGTTCCTGAAGTTTCACCTTTGACGACATGGCCAAGCTCACCTCTCCCAGTACCTACACT ATACCCTCAAGAGAATGAGGGCAAAACTCTGGTTCCATCAGGGAGATGA
AA sequence Show only first row Show all	>Lus10003437 pacid=23164888 polypeptide=Lus10003437 locus=Lus10003437.g ID=Lus10003437.BGIv1.0 annot-version=v1.0 MADLLNKSHLFSSSWRASSCSSSRSYESHQHGQICVAGKSRSSRFNGLSLKAKSQTVRSHAVPFGARRGHLRRASSLRAQLMSGRIGNVQKWWEKGLQSN MKEITSARDLVDSLLNAGDKLVVVDFFSPGCGGCKALHPKICQLAEGNPDVQFLHVNYEEHKSMCYSLNVHVLPFFRFYRGSQGRVCSFSCTNATIKKFR DALAKHSPDRCSIGPVKGLEEKELVALAANRELDFAYTQKKVHSVPDVPEVSPLTTWPSSPLPVPTLYPQENEGKTLVPSGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	0	1
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10026878 [exp]	1.0	0.9338
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	3.5	0.8758
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10038279 [exp]	5.8	0.7757
					Lus10043038 [exp]	6.6	0.8347
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	7.3	0.8549
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	9.7	0.8333
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10003621 [exp]	15.6	0.7678
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	17.1	0.8166
AT1G32250			Calcium-binding EF-hand family...		Lus10035383 [exp]	17.6	0.7482
AT1G27290			unknown protein		Lus10037037 [exp]	17.7	0.7679

Compare expression of checked genes

Lus10003437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.