Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56320 266 / 2e-88 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G02260 259 / 1e-85 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G03090 258 / 3e-85 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT2G40610 254 / 4e-84 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G37640 254 / 9e-84 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT1G69530 251 / 2e-82 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT3G55500 247 / 5e-81 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT1G26770 245 / 2e-80 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT2G39700 244 / 6e-80 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G05290 243 / 2e-79 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002638 [exp] 301 / 1e-100 AT2G37640 347 / 6e-120 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10020257 [exp] 296 / 3e-100 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1) Lus10037164 [exp] 265 / 7e-88 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 263 / 2e-87 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10033011 [exp] 261 / 2e-86 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10034227 [exp] 260 / 4e-86 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10026614 [exp] 254 / 7e-84 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034465 [exp] 249 / 2e-81 AT2G03090 273 / 5e-92 EXPANSIN 15, expansin A15 (.1) Lus10008603 [exp] 244 / 9e-80 AT2G40610 397 / 2e-141 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001100 [exp] 258 / 2e-85 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.004G123200 [exp] 258 / 3e-85 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.019G057500 [exp] 257 / 3e-85 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.010G167200 [exp] 257 / 1e-84 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 255 / 1e-84 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.013G060800 [exp] 255 / 1e-84 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.008G088300 [exp] 254 / 6e-84 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.016G135200 [exp] 252 / 5e-83 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 246 / 8e-81 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.008G057100 [exp] 240 / 3e-78 AT2G39700 459 / 6e-166 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10003438 pacid=23164867 polypeptide=Lus10003438 locus=Lus10003438.g ID=Lus10003438.BGIv1.0 annot-version=v1.0 ATGAAGAAACTTCCACTTGGAATTGCTATCGTGGCAATCCTCCTAGTCCAGTCAAATGGAGGAGGGAAACCAATCCAAGGCCACAAAAACAAACACACAC ACAAAAGCAGCCTTGTGAAACAACAACCATACCACAAGGTGGCTCACCAAAAACATCAACCGGTTTCCCAGAAGAAGAAGAAGAATCAGCATCAGCAAGT CATTGCAGCAAAATGGATCCATGCTCACGCCACTTTCTATGGAGGTGGCGATGGTTCCGGCACTATGGGCGGGGCTTGTGGATACGGGAATCTGTACAAA GAAGGATACGGAGTGAAGACCGCCGCACTGAGCACCGCCCTCTTCAACAACGGCAATGCATGCGGAGCCTGCTACGAGATCACCTGCGTCGACGACTCGC AGTGGTGCGTCCACGGCGCCATCACCGTTACGGCGACAAACTTCTGCCCTCCGAGCAGCAACGGAGGGTGGTGCGACCCGCCGGCGGAGCATTTCGACCT GTCGCAGCCCATCTTCCTCCACATAGCGCAGTACAAAGCCGGGATTGTTCCGGTGAAGTACAGGCGAGTGCCGTGCAAGCGCAAGGGAGGGATAATGTTC ACCATCACTGGAAGCACCTACTTCAATCTTGTGCTGGTGAGCAACGTCGCCGGCGCCGGCGACGTGGCGGCTGTGGGTGGGGGGGGGGGGGAGTCAAAGG GCAAGTTACCACCAGCAACGGCCGCTCCGCAGTCTCTGTTCACCATCACTGGAAGCACCTACTTCAATCTTGTGCTGGTGACCGCGGACGCGGGCGCCGC CGGCGTGGCGGCTGTGGCTGTGAAGGGATCCAAGTCAAAGGGCAAGTGGATGTCGATGACCAGGAACTGGGGTCAGAATTGGCAGGCTAATACTGCTCTT ATCGGTCAGGAATTGTCATTCAAGGTTACCACCAGCAACGGCCGCTCCGTAGTCTCGCATAACGTCGCTCCGGCGAGTTGGGGATTTGGTCAGACATTCA TTGGAGATCAGTTTTGA
AA sequence Show only first row Show all	>Lus10003438 pacid=23164867 polypeptide=Lus10003438 locus=Lus10003438.g ID=Lus10003438.BGIv1.0 annot-version=v1.0 MKKLPLGIAIVAILLVQSNGGGKPIQGHKNKHTHKSSLVKQQPYHKVAHQKHQPVSQKKKKNQHQQVIAAKWIHAHATFYGGGDGSGTMGGACGYGNLYK EGYGVKTAALSTALFNNGNACGACYEITCVDDSQWCVHGAITVTATNFCPPSSNGGWCDPPAEHFDLSQPIFLHIAQYKAGIVPVKYRRVPCKRKGGIMF TITGSTYFNLVLVSNVAGAGDVAAVGGGGGESKGKLPPATAAPQSLFTITGSTYFNLVLVTADAGAAGVAAVAVKGSKSKGKWMSMTRNWGQNWQANTAL IGQELSFKVTTSNGRSVVSHNVAPASWGFGQTFIGDQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	1.7	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036896 [exp]	2.4	1.0000
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	4.5	1.0000
					Lus10002313 [exp]	5.0	1.0000
					Lus10029558 [exp]	6.2	1.0000
					Lus10006296 [exp]	7.3	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	7.7	1.0000
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10029930 [exp]	7.7	1.0000
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10036470 [exp]	8.5	1.0000
					Lus10026844 [exp]	8.8	1.0000

Compare expression of checked genes

Lus10003438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.