Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56350 731 / 0 Pyruvate kinase family protein (.1) AT4G26390 721 / 0 Pyruvate kinase family protein (.1) AT5G08570 704 / 0 Pyruvate kinase family protein (.1) AT5G63680 695 / 0 Pyruvate kinase family protein (.1) AT3G04050 691 / 0 Pyruvate kinase family protein (.1) AT3G55650 676 / 0 Pyruvate kinase family protein (.1) AT3G25960 664 / 0 Pyruvate kinase family protein (.1) AT3G55810 624 / 0 Pyruvate kinase family protein (.1) AT3G52990 345 / 4e-113 Pyruvate kinase family protein (.1.2) AT2G36580 340 / 2e-111 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026875 [exp] 975 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 751 / 0 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 742 / 0 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 719 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 692 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 681 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 397 / 1e-136 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10008644 [exp] 338 / 2e-110 AT3G52990 967 / 0.0 Pyruvate kinase family protein (.1.2) Lus10035581 [exp] 337 / 3e-110 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060400 [exp] 756 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 756 / 0 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 753 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 747 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 700 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 694 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.010G233200 [exp] 351 / 1e-115 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 347 / 6e-114 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.006G117400 [exp] 337 / 5e-110 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 271 / 3e-84 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10003439 pacid=23164872 polypeptide=Lus10003439 locus=Lus10003439.g ID=Lus10003439.BGIv1.0 annot-version=v1.0 ATGGAGAACTCACTGACGAGATTGTTGGCTACGTCCTCAATGGCCGCCGACGCCCAGATGAAGCGCAAGACGAAGATCATCTGCACTCTCGGCCCTCAAT CTCGCTCCGTCGAGATGATCGAGACCCTGCTCTGCGCCGGCATGAACGTCGCTCGCTTCAACTTCTCTCACGGCACTCACGATTACCACCAGCAAACCCT CGACAACCTCCGTGCCGCCATGGCCAACACCTCCATCCCCTGCGCCGTCATGCTCGACACTAAGGGTCCGGAGATTCGGACGGGATTCCTGAAGGACGGG AAGCCGATAGAGCTGAAGCAAGGAAGCGAGATTGTTATCTCCACGGACTACACTCTGAAAGGCGACGAGAGCACAATCTCGATGAGCTATAAGAAGATTG CGGAGGATGTGAATCCAGGCAGCAGGATTTTGTGCTCCGACGGTACAATTTCCTTCAGAGTCCTGTCCTGCGACAAGGAACAAGGACTCGTCCGTTGCCT GTGCGAGAATTCGGCTACCTTGGGCGAGAAGAAGAATGTCAATCTCCCTGGAGTCATCGTCGATCTCCCGACCTTGACTGAGAAGGACAAGGACGACATC CTGAATTGGGGGATTCCGAACAGAATTGACGTCATTGCTCTTTCCTTCGTCCGGAAAGGATCCGATCTGACCGAGGTTAGAAACCTGATTGGGGAGAAGA ATTCGAAAAACATTATGCTGATGTCGAAGGTTGAGAATCAGGAAGGGATTATCAACATCGATGAGATTATTGCGAATTCGGATGCTCTGATGGTTGCTAG AGGCGACTTGGGGATGGAGATTCCTGTGGAAAAGATGTTCCTCGCTCAGAAGACGATGATCCGGAAGGCCAACATTCAAGGAAAGCCAGTCGTGACGGCT ACACAGATGCTCGAATCGATGATCAAGTCGCCCAGGCCGACTCGCGCTGAGGCGACCGATGTCGCGAATGCTGTTCTCGACGGAACTGATTGCGTGATGC TTAGCGGGGAGACTGCTGCTGGGGCTTATCCCGAGCTGGCGGTTCGAACAATGGCGAGGATATGCATCGAGGCGGAGAGTTCTATTGATTACGGAGATTG TTTCAAGAGGACGATGAAGAGTGTGCCTCTGCCGTTGAGCCCGCTGGAGAGCTTGGCTGTTTCTGCTGTGAGGACTGCGAAGCATATCAATGCTGCTTTG ATTCTGGTGTTGACTAAAGGTGGGAGCACTGCCAGGCTGCTGTCCAAGTACAGGCCGCACGTTCCGATTCTGTCGGTGGTCGTGCCGGAAATCGGTACTG ATGCTTCGTTCGAGTGGACTTGTAGCGATGAGTCTCCTGCTAGGCATGGCCTTGTCAGCTGGGGTGTAATCCCGGTTCTGAGCTCGTCTCATGTGACCGA ATCGGATCAGGAATCGTCGGAAGTTACGATCTCGAAGGGGCTCGAGGATGCGACCAGGAATGGGCTTTGCAGGGTGGGAGACTCGGTTGTGGCGCTTCAT AAGATTGGGACTGCAGCAGTGATCAAGATTGTTCAAGTTCAGTAA
AA sequence Show only first row Show all	>Lus10003439 pacid=23164872 polypeptide=Lus10003439 locus=Lus10003439.g ID=Lus10003439.BGIv1.0 annot-version=v1.0 MENSLTRLLATSSMAADAQMKRKTKIICTLGPQSRSVEMIETLLCAGMNVARFNFSHGTHDYHQQTLDNLRAAMANTSIPCAVMLDTKGPEIRTGFLKDG KPIELKQGSEIVISTDYTLKGDESTISMSYKKIAEDVNPGSRILCSDGTISFRVLSCDKEQGLVRCLCENSATLGEKKNVNLPGVIVDLPTLTEKDKDDI LNWGIPNRIDVIALSFVRKGSDLTEVRNLIGEKNSKNIMLMSKVENQEGIINIDEIIANSDALMVARGDLGMEIPVEKMFLAQKTMIRKANIQGKPVVTA TQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMARICIEAESSIDYGDCFKRTMKSVPLPLSPLESLAVSAVRTAKHINAAL ILVLTKGGSTARLLSKYRPHVPILSVVVPEIGTDASFEWTCSDESPARHGLVSWGVIPVLSSSHVTESDQESSEVTISKGLEDATRNGLCRVGDSVVALH KIGTAAVIKIVQVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	2.8	0.9614
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10034042 [exp]	5.3	0.9576
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	5.5	0.9567
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	6.6	0.9561
					Lus10028589 [exp]	7.1	0.9427
AT1G14550			Peroxidase superfamily protein...		Lus10009898 [exp]	7.9	0.9407
					Lus10005655 [exp]	8.0	0.9338
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	9.2	0.9547
AT3G62550			Adenine nucleotide alpha hydro...		Lus10029850 [exp]	9.4	0.9515
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Lus10017365 [exp]	9.9	0.9040

Compare expression of checked genes

Lus10003439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.