Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13990 203 / 4e-63 Exostosin family protein (.1) AT2G29040 202 / 3e-61 Exostosin family protein (.1) AT2G20370 194 / 6e-59 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G32750 184 / 8e-56 Exostosin family protein (.1) AT2G31990 162 / 6e-48 Exostosin family protein (.1) AT2G32740 161 / 1e-47 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT1G63450 154 / 8e-44 RHS8 root hair specific 8 (.1) AT5G41250 146 / 3e-41 Exostosin family protein (.1) AT1G68470 140 / 9e-40 Exostosin family protein (.1) AT5G62220 132 / 2e-36 ATGT18 glycosyltransferase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001028 [exp] 360 / 4e-124 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10010677 [exp] 252 / 4e-82 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 251 / 1e-81 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10001578 [exp] 211 / 2e-65 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 208 / 3e-64 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 207 / 3e-64 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10022862 [exp] 202 / 5e-62 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10024961 [exp] 201 / 3e-61 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10016532 [exp] 197 / 7e-61 AT2G29040 546 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147800 [exp] 252 / 9e-82 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 219 / 7e-69 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 200 / 2e-61 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.009G032500 [exp] 188 / 2e-56 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 153 / 1e-43 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G382200 [exp] 137 / 4e-38 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 136 / 5e-38 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 126 / 4e-34 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 121 / 2e-32 AT4G22580 593 / 0.0 Exostosin family protein (.1) Potri.015G132600 [exp] 120 / 6e-32 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10003440 pacid=23164889 polypeptide=Lus10003440 locus=Lus10003440.g ID=Lus10003440.BGIv1.0 annot-version=v1.0 ATGAAGCAGTGCCTAGCTTCCCTGAACAAATGCAAGCTGCTCAACTGTGCTCCAGTTGGGAAATGTGACAGTCCAGCTACGGTGATGAAGGTGCTGCAGA ACTCATTCTTCTGCCTACATCCAGCTGGTGATTCACCAACCAGGAGACCGACATTCGATTCGATCTTGGCCGGGTGCATCCCTGTGTTCTTCCATCCTTA CTCAGCTTACGGACAGTACACATGGCATCTGCCGAGAAACTACTCTTCGTATTCTGTTTACATACCGGAAGAGCTGGTCAGAGAAGGGAAAGTCAACGTC AAAGAACGGTTGCTTCGAGTTTCGGAAGCAGAGGTTGCGGCAATGAGAGAGGCGGTGATAGAGTTGATTCCGAAGGTGACGTATGGTGATCCCAGATCGA AATTGTTGGGATTCGAAGATGCATTTGGGATAGCGGTTAAAGGAGTTCTGGAAAGAATTGGTAAGGTTAGAAGACAGGTTGAGGAAGGGAATGATCCAGG AAATGGATTTGCTAAACCAGATGGCTGGAAGTTGAAATTGGATGGTGTAGGCAGTGACCATGAGTGGGATACGTTCTTGTGA
AA sequence Show only first row Show all	>Lus10003440 pacid=23164889 polypeptide=Lus10003440 locus=Lus10003440.g ID=Lus10003440.BGIv1.0 annot-version=v1.0 MKQCLASLNKCKLLNCAPVGKCDSPATVMKVLQNSFFCLHPAGDSPTRRPTFDSILAGCIPVFFHPYSAYGQYTWHLPRNYSSYSVYIPEELVREGKVNV KERLLRVSEAEVAAMREAVIELIPKVTYGDPRSKLLGFEDAFGIAVKGVLERIGKVRRQVEEGNDPGNGFAKPDGWKLKLDGVGSDHEWDTFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	1.4	0.9302
					Lus10019810 [exp]	3.9	0.9320
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	4.0	0.8541
AT3G15280			unknown protein		Lus10005404 [exp]	5.5	0.8451
AT4G05130		ATENT4	equilibrative nucleoside trans...		Lus10002590 [exp]	7.3	0.8659
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	7.9	0.7695
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	9.9	0.7650
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	11.4	0.8487
AT3G19920			unknown protein		Lus10010180 [exp]	11.6	0.7849
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	12.7	0.8483

Compare expression of checked genes

Lus10003440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.