Plant FIBer expression Database

Lus10003441 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47790 317 / 2e-108 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001029
[exp]
443 / 4e-158 AT2G47790 552 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G205600
[exp]
326 / 4e-112 AT2G47790 534 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.014G130600
[exp]
291 / 2e-98 AT2G47790 492 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10003441 pacid=23164875 polypeptide=Lus10003441 locus=Lus10003441.g ID=Lus10003441.BGIv1.0 annot-version=v1.0
ATGGATGATGTCACTCAGGTCCATTTTGTCCCTGGCCGCCAGCACAAGCTTCTTTCTGCTTCCATCGATGGGTTGGCGTGTGTTTTCAATACCAGTGGTG
ATATCAATGAGGACGATGATCTTGACTCAGTTATTAATGTGGGGACATCAATTGGCAAAGTAGGTTTCTTTGGAGACAAGTTTCAGAAACTTTGGTGCTT
AACACATATCGAAAGTCTGAGTATTTGGGACTGGGAGGAAGGGAGATGTGAAACGAATCTGACAGACGCCCGCGCATTGGCCTCGGAGAGTTGGGCGTTA
GACAATGTGGATTATTTTGTAGATTGCCACTGCCCAGGAGAAGGGGACAAGCTCTGGGTGATCGGTGGCACCAAGGCTGGTACAATCGGGTACTTCGGGG
TGAACCATAGAGAAGGGAGAATCGGAAGCCCGGAAGCAATTCTCGGGGGTGGACATGCCGACATTTTCAGAAGTGTATTGCCGATGATGTCAGGCACCGG
ACCTCTTGTGAATGGAGGTGCTTTCGGATGGACTGGAGGGGAGGATGGGCAGTTGTGTTGCTGGCTTTCGGACGAGTCCAGTATGATTGATCAGTCCTGG
ACGTCGAGTGCTTTGGTGGTTAAACCACCCAAGAAACGGAAGAACCACAGGCATCAACCGTACTAG
AA sequence
>Lus10003441 pacid=23164875 polypeptide=Lus10003441 locus=Lus10003441.g ID=Lus10003441.BGIv1.0 annot-version=v1.0
MDDVTQVHFVPGRQHKLLSASIDGLACVFNTSGDINEDDDLDSVINVGTSIGKVGFFGDKFQKLWCLTHIESLSIWDWEEGRCETNLTDARALASESWAL
DNVDYFVDCHCPGEGDKLWVIGGTKAGTIGYFGVNHREGRIGSPEAILGGGHADIFRSVLPMMSGTGPLVNGGAFGWTGGEDGQLCCWLSDESSMIDQSW
TSSALVVKPPKKRKNHRHQPY

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G47790 Transducin/WD40 repeat-like su... Lus10003441
[exp]
0 1
AT2G27030 CAM5, CAM2, ACA... calmodulin 5 (.1.2.3) Lus10010386
[exp]
2.0 0.8789
AT5G55500 ATXYLT "beta-1,2-xylosyltransferase",... Lus10014902
[exp]
3.5 0.8757
AT5G62810 ATPEX14, PED2, ... PEROXISOME DEFECTIVE 2, peroxi... Lus10039935
[exp]
5.7 0.8573
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10011717
[exp]
6.0 0.8721
AT5G15280 Pentatricopeptide repeat (PPR)... Lus10015373
[exp]
6.1 0.7639
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Lus10006596
[exp]
8.1 0.8407
AT2G39260 binding;RNA binding (.1) Lus10030801
[exp]
8.9 0.8417
AT1G76970 Target of Myb protein 1 (.1) Lus10017220
[exp]
9.2 0.7915
AT3G03980 NAD(P)-binding Rossmann-fold s... Lus10002628
[exp]
9.2 0.8355
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10011716
[exp]
12.3 0.8288

Lus10003441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.