Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001031 [exp] 218 / 2e-74 ND 38 / 8e-04 Lus10003443 [exp] 152 / 2e-48 ND / Lus10001030 [exp] 112 / 1e-32 ND / Lus10019332 [exp] 97 / 1e-26 ND / Lus10009372 [exp] 56 / 2e-10 ND / Lus10012129 [exp] 53 / 2e-09 ND / Lus10019334 [exp] 52 / 4e-09 AT1G70690 40 / 2e-04 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) Lus10012134 [exp] 51 / 9e-09 AT5G40380 37 / 0.002 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10012132 [exp] 49 / 4e-08 ND 38 / 0.001
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10003442 pacid=23164863 polypeptide=Lus10003442 locus=Lus10003442.g ID=Lus10003442.BGIv1.0 annot-version=v1.0 ATGATGTTACAATCATTAACAGCAGTGTTCTTCCTGGTAGCAATCATTCCGTGGTCTTGCGTGAACTCCATTGATGATCCATACTGTGATGGATTGCCTG ACGGCGAATCCAGGTGCAATTCGGACCTGATCTCGCAGAATACTCAGAGAAGTCAAGATGACATATTGGACATCTTAAAGTCCGATGTCTTCTCTTACGA AAAAGCCATCGCCTGTTACAATATTGATTCAACCAACGGTTATTTCTCTTGCAATCAGTTACGTGACGACTGCAAAACGTGTTATGATGCCGCCGTGGTA AAGATGAAATATTGGTGTCCTGGTAGAGCTGGTGCAGCTGTCTCGTTGGAGCATTGTTGTCTAAGGTATGAGACTGCGTATCACTTTTGTCGTCCCATGT GA
AA sequence Show only first row Show all	>Lus10003442 pacid=23164863 polypeptide=Lus10003442 locus=Lus10003442.g ID=Lus10003442.BGIv1.0 annot-version=v1.0 MMLQSLTAVFFLVAIIPWSCVNSIDDPYCDGLPDGESRCNSDLISQNTQRSQDDILDILKSDVFSYEKAIACYNIDSTNGYFSCNQLRDDCKTCYDAAVV KMKYWCPGRAGAAVSLEHCCLRYETAYHFCRPM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003442 [exp]	0	1
					Lus10019938 [exp]	3.5	0.7159
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007249 [exp]	4.7	0.7734
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014586 [exp]	8.0	0.7040
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	11.4	0.6947
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10015136 [exp]	12.7	0.7123
AT2G01050			zinc ion binding;nucleic acid ...		Lus10032865 [exp]	12.7	0.6787
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10024675 [exp]	12.7	0.6819
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10008454 [exp]	13.5	0.6552
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10030027 [exp]	17.5	0.6681
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10030442 [exp]	19.3	0.6658

Compare expression of checked genes

Lus10003442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.