Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001031 [exp] 157 / 1e-50 ND 38 / 8e-04 Lus10003442 [exp] 152 / 1e-48 ND 37 / 0.002 Lus10019332 [exp] 108 / 4e-31 ND / Lus10001030 [exp] 102 / 7e-29 ND / Lus10019334 [exp] 54 / 8e-10 AT1G70690 40 / 2e-04 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) Lus10012130 [exp] 53 / 2e-09 ND 39 / 4e-04 Lus10012129 [exp] 53 / 2e-09 ND / Lus10019333 [exp] 52 / 4e-09 ND / Lus10010416 [exp] 47 / 2e-07 ND 36 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G025425 [exp] 40 / 0.0002 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10003443 pacid=23164893 polypeptide=Lus10003443 locus=Lus10003443.g ID=Lus10003443.BGIv1.0 annot-version=v1.0 ATGACCTCACAATCATCATTGAGAACAATAACACTACTGTTGTTCCTGGTAGCAATCATCACTTGCTCTCGTGTGAACTCCATTGATGATCCATACTGTG ATGGTGGTGGTAGGTGCAGTCCGGACCCGTTGGACACGAGCGGTCAGATCGCTACTCAAGATTTCGTATTGGACCGCTTAAAGCAGGATGTCTTCAGTTA CGATAAACCCTTCGCTTGTTACACTATCTATTCAGCCAACGCTTATTTCTCATGCAATAGGTTACGTGAGGAGTGCAAATCATGTTTTGATGCCGCCGCC GCCAGCATCACAAGTTGGTGTCCTGATAGAGCTGGGGCAGCTGTGTCGTTGGACCACTGTTGTCTGAGGTATGAGACTGAATATGCCTTTTGTAATTCCA ACAAGTGA
AA sequence Show only first row Show all	>Lus10003443 pacid=23164893 polypeptide=Lus10003443 locus=Lus10003443.g ID=Lus10003443.BGIv1.0 annot-version=v1.0 MTSQSSLRTITLLLFLVAIITCSRVNSIDDPYCDGGGRCSPDPLDTSGQIATQDFVLDRLKQDVFSYDKPFACYTIYSANAYFSCNRLREECKSCFDAAA ASITSWCPDRAGAAVSLDHCCLRYETEYAFCNSNK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003443 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001032 [exp]	2.8	0.8601
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001041 [exp]	5.1	0.8913
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10025192 [exp]	8.0	0.7719
AT3G07600			Heavy metal transport/detoxifi...		Lus10016060 [exp]	8.8	0.8481
					Lus10017842 [exp]	11.7	0.8475
					Lus10010826 [exp]	13.0	0.8475
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	13.0	0.8027
					Lus10011629 [exp]	14.3	0.8475
					Lus10022108 [exp]	15.4	0.8475
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	16.5	0.8475

Compare expression of checked genes

Lus10003443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.