Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02360 65 / 1e-12 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02240 64 / 4e-12 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT1G80110 61 / 3e-11 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02340 61 / 4e-11 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02310 59 / 3e-10 ATPP2-B6 phloem protein 2-B6 (.1) AT2G02230 56 / 3e-09 ATPP2-B1 phloem protein 2-B1 (.1) AT5G24560 55 / 3e-09 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02300 51 / 8e-08 ATPP2-B5 phloem protein 2-B5 (.1) AT2G02250 51 / 1e-07 ATPP2-B2 phloem protein 2-B2 (.1) AT1G56250 49 / 6e-07 ATPP2-B14 phloem protein 2-B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003445 [exp] 318 / 3e-112 AT2G02310 65 / 2e-12 phloem protein 2-B6 (.1) Lus10003449 [exp] 219 / 2e-69 AT2G02360 102 / 4e-24 phloem protein 2-B10 (.1) Lus10029673 [exp] 105 / 1e-27 AT2G02230 180 / 4e-55 phloem protein 2-B1 (.1) Lus10042712 [exp] 100 / 2e-25 AT2G02230 179 / 6e-55 phloem protein 2-B1 (.1) Lus10008898 [exp] 69 / 6e-14 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10023207 [exp] 63 / 6e-12 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10015208 [exp] 63 / 9e-12 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10029674 [exp] 63 / 9e-12 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10042713 [exp] 60 / 8e-11 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050100 [exp] 69 / 3e-14 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.006G266900 [exp] 64 / 4e-12 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 63 / 5e-12 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 63 / 7e-12 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 62 / 2e-11 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G267000 [exp] 60 / 8e-11 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.013G012600 [exp] 59 / 2e-10 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 55 / 4e-09 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.015G120300 [exp] 50 / 2e-07 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1) Potri.012G120400 [exp] 45 / 6e-06 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003444 pacid=23164874 polypeptide=Lus10003444 locus=Lus10003444.g ID=Lus10003444.BGIv1.0 annot-version=v1.0 ATGTCTGGGACCCATGCAGCCAATAACAAGAAACCCGCGCCGTCCCCGCCGCCGCCGCCTCCCCCGGCCGTGGATGAGAAGATAGTGACGATTGGGGCGA AAGATGTGAGAATCACGTGGGGAGAAGACCCAACCCATTGGAAATGGACGGCCGATTCGGCGGCCGGGGAGCTATTGGACGTTTGGTGGTTCGATGTATC GACCCAAGTAGACATGGGGACGAATCGTATGTTGATGACGCTGCCGTTAAACGCGAGCTACGGGGCCTACTTTGTGTACAAGTTGCCGATCGACGCGCAA GGGTTCGAGAGCGATCAATGGTTTGACGTGGAGGTCGGGATTGAAGGAAGGAACGATACCAGCAGTGGAGTTGTTTATCTTCAAGGGAGCGATTCGAGCT CGAGGATGAGGGCCGACGGATGGTCGGAGGTTAAGCTCGGAGATTTCTTGACGGTGGGTAGAAATGATGAGGGGACGGTACCGGACCAGAACAAGTACTC GGTTGGTTTGAAGTTGTATAATCATCGGGGTACTTACAAGACTGGTATCCTCATTCATGGGTTTGAACTCAGGCCCAACTAA
AA sequence Show only first row Show all	>Lus10003444 pacid=23164874 polypeptide=Lus10003444 locus=Lus10003444.g ID=Lus10003444.BGIv1.0 annot-version=v1.0 MSGTHAANNKKPAPSPPPPPPPAVDEKIVTIGAKDVRITWGEDPTHWKWTADSAAGELLDVWWFDVSTQVDMGTNRMLMTLPLNASYGAYFVYKLPIDAQ GFESDQWFDVEVGIEGRNDTSSGVVYLQGSDSSSRMRADGWSEVKLGDFLTVGRNDEGTVPDQNKYSVGLKLYNHRGTYKTGILIHGFELRPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	0	1
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	1.0	0.9612
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	2.0	0.9426
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	7.3	0.9516
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	8.3	0.9499
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10042001 [exp]	8.4	0.9056
					Lus10038768 [exp]	9.5	0.8999
AT3G01190			Peroxidase superfamily protein...		Lus10018374 [exp]	10.5	0.9305
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10013782 [exp]	14.4	0.9353
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	15.0	0.9364
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016318 [exp]	15.2	0.8701

Compare expression of checked genes

Lus10003444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.