Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02360 64 / 3e-12 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02310 62 / 1e-11 ATPP2-B6 phloem protein 2-B6 (.1) AT2G02340 59 / 1e-10 ATPP2-B8 phloem protein 2-B8 (.1) AT1G80110 57 / 6e-10 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02240 57 / 9e-10 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02230 54 / 1e-08 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02300 52 / 4e-08 ATPP2-B5 phloem protein 2-B5 (.1) AT1G56250 47 / 2e-06 ATPP2-B14 phloem protein 2-B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003444 [exp] 321 / 2e-113 AT2G02360 67 / 3e-13 phloem protein 2-B10 (.1) Lus10003449 [exp] 221 / 6e-70 AT2G02360 102 / 4e-24 phloem protein 2-B10 (.1) Lus10029673 [exp] 99 / 4e-25 AT2G02230 180 / 4e-55 phloem protein 2-B1 (.1) Lus10042712 [exp] 96 / 9e-24 AT2G02230 179 / 6e-55 phloem protein 2-B1 (.1) Lus10008898 [exp] 64 / 5e-12 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10023207 [exp] 60 / 1e-10 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10015208 [exp] 57 / 8e-10 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10029674 [exp] 57 / 1e-09 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10031484 [exp] 55 / 6e-09 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050100 [exp] 66 / 8e-13 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.005G022000 [exp] 60 / 1e-10 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 58 / 6e-10 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.018G016100 [exp] 55 / 5e-09 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 55 / 5e-09 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 52 / 8e-08 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.015G120300 [exp] 47 / 2e-06 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1) Potri.018G015800 [exp] 47 / 3e-06 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.012G120400 [exp] 41 / 0.0002 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003445 pacid=23164881 polypeptide=Lus10003445 locus=Lus10003445.g ID=Lus10003445.BGIv1.0 annot-version=v1.0 ATGTCTGAGAGTCTTGCAGCCAGTAACAAGAAACCGCCGCCGCCTCCTCCTCCGTCTCCGCCGCCTCCCCCGGCTGCGGATCAGAAGACAGTGATGATTG GGGCGCTAGACGTGAGAATCGGTGGCGGGGACGAGCCGAACCATTGGAAATGGTCGGCGGATTCCGAGATGTGCCCGGCCGATTCGGCGGCCGGGGAGCT ATTGGACGTTTGGTGGTTCGATGTATCGACCCAAGTAGACATGGGGACGAATCGTATGTTGATGACGCTGCCGTTAAACGCGAGCTACGGGGCCTACTTT GTGTACAAGTTGCCGGTCGATGCGCAAGGGTTCGAGAGCGATCAATGGTTTGACGTCGAGGTCGGGATTGAAGGAAGGAACGATACCAGCAATGGAGTTG TTTATCTTCAAGGGAGCGATTCGAGCTCGAGGATGAGGGCAGACGGATGGTCGGAGGTTAAGATCGGGGATTTCTTGACTGTGGGTAGAAATGATGAGGG GACGGTACCGGACCAGAACAAGTACTCGGTTGGTTTGAAGTTGTATAATCATCGGGGTACTTACAAGACTGGTATCCTCATTTATGGGTTTGAACTCAGG CCCAATTAG
AA sequence Show only first row Show all	>Lus10003445 pacid=23164881 polypeptide=Lus10003445 locus=Lus10003445.g ID=Lus10003445.BGIv1.0 annot-version=v1.0 MSESLAASNKKPPPPPPPSPPPPPAADQKTVMIGALDVRIGGGDEPNHWKWSADSEMCPADSAAGELLDVWWFDVSTQVDMGTNRMLMTLPLNASYGAYF VYKLPVDAQGFESDQWFDVEVGIEGRNDTSNGVVYLQGSDSSSRMRADGWSEVKIGDFLTVGRNDEGTVPDQNKYSVGLKLYNHRGTYKTGILIYGFELR PN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02310		ATPP2-B6	phloem protein 2-B6 (.1)		Lus10003445 [exp]	0	1
AT5G42500			Disease resistance-responsive ...		Lus10021084 [exp]	3.9	0.8993
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10038057 [exp]	7.1	0.9242
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Lus10032261 [exp]	8.9	0.9212
AT3G24750			unknown protein		Lus10038162 [exp]	21.8	0.9030
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10010940 [exp]	23.5	0.9013
AT5G24070			Peroxidase superfamily protein...		Lus10004804 [exp]	24.7	0.8782
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10003191 [exp]	27.0	0.8690
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10035443 [exp]	27.7	0.7826
AT2G17080			Arabidopsis protein of unknown...		Lus10023964 [exp]	28.4	0.8970
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10026040 [exp]	28.7	0.8912

Compare expression of checked genes

Lus10003445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.