Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001032 [exp] 237 / 7e-81 AT1G24020 44 / 1e-05 MLP-like protein 423 (.1.2) Lus10001033 [exp] 207 / 4e-69 AT1G24020 42 / 6e-05 MLP-like protein 423 (.1.2) Lus10003450 [exp] 110 / 3e-32 ND 39 / 6e-05 Lus10001042 [exp] 84 / 7e-21 AT1G24020 69 / 5e-15 MLP-like protein 423 (.1.2) Lus10003451 [exp] 82 / 4e-20 AT1G24020 73 / 7e-17 MLP-like protein 423 (.1.2) Lus10000474 [exp] 81 / 1e-19 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10001041 [exp] 79 / 5e-19 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10014241 [exp] 78 / 2e-18 AT1G24020 61 / 5e-12 MLP-like protein 423 (.1.2) Lus10001036 [exp] 74 / 1e-15 AT1G24020 68 / 2e-13 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 53 / 4e-09 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003448 pacid=23164877 polypeptide=Lus10003448 locus=Lus10003448.g ID=Lus10003448.BGIv1.0 annot-version=v1.0 ATGAGTACCGGAACAAAGAAGGCGACGTTTATGATGCAATCCTCAGCCAACGATGTGTGGAATTCCATCGTCGCCGCCCCGATCGTCTTCCCTATGGCGA TGCGCGACCTCTATTCTAATATCGAACGCGTCATCGGTGATGGTGTAACCCAAGGCTCCATTCGAGACATCACTTTCGGAATTGGTAATTGGTGCTATAG TACTCAGTTTCGTTTTTCTAGTGGTGCCGTCGGCAAGGGAGATGATAACGGAGATCGACCATGCGAAAATGGCGGTGAAATCGAAATTCTCGTCCAACGA GGTTCCCTGGTGCCGACAGTGTTCGACAATTTCGAGACCACGATGGCGGTGGAGCCCTTGTCTGACGGACGTCCGGGCTGCACCGTTCATTGGGAGTGTC ATTTCTACACTCACGACGTGAGCACTAGGGGGAGCTTGTTCTTGGATGACCTCATAAGTGTTATGCAGAGTGCCTTTGAGGGTAATTTGGACAGCTACCT TCAGAGGGCCGCCCGCCGCAACTGA
AA sequence Show only first row Show all	>Lus10003448 pacid=23164877 polypeptide=Lus10003448 locus=Lus10003448.g ID=Lus10003448.BGIv1.0 annot-version=v1.0 MSTGTKKATFMMQSSANDVWNSIVAAPIVFPMAMRDLYSNIERVIGDGVTQGSIRDITFGIGNWCYSTQFRFSSGAVGKGDDNGDRPCENGGEIEILVQR GSLVPTVFDNFETTMAVEPLSDGRPGCTVHWECHFYTHDVSTRGSLFLDDLISVMQSAFEGNLDSYLQRAARRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003448 [exp]	0	1
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	1.0	0.8928
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	2.0	0.8367
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10014241 [exp]	2.4	0.8667
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	2.4	0.8675
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	5.1	0.8017
AT4G35150			O-methyltransferase family pro...		Lus10033653 [exp]	10.1	0.7465
AT1G05577			Domain of unknown function (DU...		Lus10037468 [exp]	13.0	0.7154
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	13.2	0.8083
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10031391 [exp]	14.2	0.8083
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	15.0	0.7552

Compare expression of checked genes

Lus10003448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.