Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02360 102 / 3e-24 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02240 99 / 7e-23 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02300 97 / 4e-22 ATPP2-B5 phloem protein 2-B5 (.1) AT1G80110 88 / 3e-19 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02250 84 / 1e-17 ATPP2-B2 phloem protein 2-B2 (.1) AT5G24560 82 / 2e-17 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02340 82 / 4e-17 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02230 81 / 2e-16 ATPP2-B1 phloem protein 2-B1 (.1) AT1G09155 72 / 1e-13 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02310 70 / 6e-13 ATPP2-B6 phloem protein 2-B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003445 [exp] 219 / 1e-68 AT2G02310 65 / 2e-12 phloem protein 2-B6 (.1) Lus10003444 [exp] 218 / 2e-68 AT2G02360 67 / 3e-13 phloem protein 2-B10 (.1) Lus10000475 [exp] 187 / 3e-52 ND / Lus10019691 [exp] 178 / 1e-49 ND / Lus10016424 [exp] 176 / 1e-48 ND / Lus10042237 [exp] 175 / 5e-47 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10026416 [exp] 165 / 4e-46 AT5G52410 42 / 0.001 unknown protein Lus10026417 [exp] 167 / 8e-46 ND / Lus10000479 [exp] 167 / 1e-44 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050100 [exp] 105 / 1e-25 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.018G016100 [exp] 101 / 9e-24 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G016000 [exp] 100 / 3e-23 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G267000 [exp] 97 / 3e-22 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 95 / 2e-21 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 89 / 2e-19 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.005G022000 [exp] 84 / 6e-18 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 83 / 2e-17 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.015G120300 [exp] 68 / 5e-13 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1) Potri.012G120400 [exp] 56 / 3e-08 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003449 pacid=23164885 polypeptide=Lus10003449 locus=Lus10003449.g ID=Lus10003449.BGIv1.0 annot-version=v1.0 ATGGCTCCCTTCAACTTCAGGTCCGACAAGCACTTCGTCACTTCCTCGGACGGAACTACCCTCCAAGTCTACGAGTTGACCAAGCCTGTCACCCAACCTT CTTCCATCCAGAAGTCTTCTTGGAAGCCGATTGCAACCATCGATACGGCGGCTATTGCCGACGATCTCGATGACGAAGATGATGACGTAGCTACCGGGGA CGAATCCTCGTACAGTGGACTCCTCTTCTTCGATGGCCATGGACGGATCGAGGGTAGGGAAGGGTTGACTACGCTAGCTCGACACCTGTCGCAGTTACAC TTGTTGGTGAATCCTGCAGGGTACTCTTTCCAAAACGCCTCAACGCTCAGTGGTAGTCAGTACCCTGACTTCGGGATCCACTACCTTAGACTGAACGATC TGTTTAGCTGGCCCCATCACGAGGTCGGTCTTGTGTCGACTGACCAGTGGGGCCGGCACGAGCTAAAGTACCACGAGCCTAGGAGGAACACGAGCAATAA TAAGCCGACGAGAAACGCAGGGGCGGCCAAGGATAAGCACTACTATGAAGAGTTGATGAAGAAGAAAGACGAGGAATTGGCTGAGCTCAGAGAGAAGCTC GAGGAGACGAATGAAGCTCGACGTGAAGAAGTGGAGAAGCTAAGAAAGGAGAAGGATGCGGAAACGAAGAAGATGACAAAGATGGTTAAGAAGAAGAAAG TTGACGACGAGGCAAAAGAGAAAAGAATAGAGGAACTCGAGAAGTTGAAGGAGGAGTTGGAGGAGAAGGTGGAAGTGAAGGAAGAAGAGTTGCAAAACGC GAATAAAGAGAAGAAAGAAGAGCTGCGTACGCTACTCGTAAAGAAAGACAACGAAATCCGAGTCCTCCGAAATAGCAAGGACGGTGAGTCGCGAAAGAGC GAGTTTGAAAAAATGTTACGAGTAAAAGACGAGGAATTAAGAACCAAGGAAGAGGAATTACAAAAGCTCAAGGCGGCGGGCGCGGGTAAAGCCACCATAA GCGGTGGGGATCATAAGACAGTGATGATTGGGGCGACAGATTTGAGAATCACGTGGGGAGAGAACCCGAACCATTGGAAGTGGAGGAGCGACCCGGATTC GAGATATGGCGAGGTGGCGGAGCTATTGAACGTGTGGTGGTTCGATGTAACGGGGAAAGTAGACATGGGGACGAACAGGATGCTGTTGACACTGCCCGGG AAAGCAAGCTACGGGGCGTACTTTGTGTTCAAGATGCCGAGTAACGCACAAGGGTTCGGGAATCAAGTGATGGAGGTTGAGGTGGGAATTGGGGGAAGGA CTGTTAGCAAGGGAGTGGTTTATTTGCAAGGGAGGAAGAGAGGAGACGGGTGGTCGGAGGTCAAGATGGGAGATTTCTCGACGGTGGGTAAGGATGCTGA GGGGGCGATAAAGGACCAAGACAAATACTGCGTGGAGTTGAAGTTGTATAATCATATGGGTACCTTGAAGACTGGTGTTGTCGTTTATGGGATTGAACTC AGGCCCAATTAG
AA sequence Show only first row Show all	>Lus10003449 pacid=23164885 polypeptide=Lus10003449 locus=Lus10003449.g ID=Lus10003449.BGIv1.0 annot-version=v1.0 MAPFNFRSDKHFVTSSDGTTLQVYELTKPVTQPSSIQKSSWKPIATIDTAAIADDLDDEDDDVATGDESSYSGLLFFDGHGRIEGREGLTTLARHLSQLH LLVNPAGYSFQNASTLSGSQYPDFGIHYLRLNDLFSWPHHEVGLVSTDQWGRHELKYHEPRRNTSNNKPTRNAGAAKDKHYYEELMKKKDEELAELREKL EETNEARREEVEKLRKEKDAETKKMTKMVKKKKVDDEAKEKRIEELEKLKEELEEKVEVKEEELQNANKEKKEELRTLLVKKDNEIRVLRNSKDGESRKS EFEKMLRVKDEELRTKEEELQKLKAAGAGKATISGGDHKTVMIGATDLRITWGENPNHWKWRSDPDSRYGEVAELLNVWWFDVTGKVDMGTNRMLLTLPG KASYGAYFVFKMPSNAQGFGNQVMEVEVGIGGRTVSKGVVYLQGRKRGDGWSEVKMGDFSTVGKDAEGAIKDQDKYCVELKLYNHMGTLKTGVVVYGIEL RPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	0	1
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	2.0	0.9076
					Lus10026417 [exp]	2.4	0.9128
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	7.4	0.9004
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	7.5	0.9079
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	8.4	0.9036
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	10.8	0.9015
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	11.3	0.9024
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	11.4	0.9150
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	11.6	0.8821
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	18.7	0.8225

Compare expression of checked genes

Lus10003449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.