Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 73 / 1e-16 MLP423 MLP-like protein 423 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001042 [exp] 237 / 3e-81 AT1G24020 69 / 5e-15 MLP-like protein 423 (.1.2) Lus10001041 [exp] 226 / 6e-77 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10000474 [exp] 225 / 2e-76 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10014241 [exp] 189 / 2e-62 AT1G24020 61 / 5e-12 MLP-like protein 423 (.1.2) Lus10001037 [exp] 191 / 4e-61 AT1G24020 68 / 7e-14 MLP-like protein 423 (.1.2) Lus10001036 [exp] 187 / 6e-58 AT1G24020 68 / 2e-13 MLP-like protein 423 (.1.2) Lus10001033 [exp] 128 / 6e-38 AT1G24020 42 / 6e-05 MLP-like protein 423 (.1.2) Lus10001032 [exp] 118 / 3e-34 AT1G24020 44 / 1e-05 MLP-like protein 423 (.1.2) Lus10001035 [exp] 113 / 1e-29 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 54 / 1e-09 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10003451 pacid=23164894 polypeptide=Lus10003451 locus=Lus10003451.g ID=Lus10003451.BGIv1.0 annot-version=v1.0 ATGACTACCGACTTCCTCGAAGTTCATTTGAATTCGTCTGCCAACGATGTTTGGGGTGCCATCACCGCCGGAACAGCTCTTTACCCCAAGGCCATGCGCG ATCTCTACCAGCAGATCAAGTCCATCAAGGGCGACGGTTTCACCTCTGGATCTATGCGTACAATCACCTTCGGCTATGCTTACGATCGGGTTGTGAAGAA TGCCACAGAGGAGATCCGTGACGTTGACCACGAGAACTTGACTATCAAGTCAAGATTTACCGGTGACGGAGGTTTCGTCCCGAAGTTGTTTGCGACGTTT GATATGAAAATAACTGTGGTGCGTTTGAGCCGGGAAATGAGAGACCCGGGCTGCATGATTAAGTGGGAGTTCACTTACGATAGAGGATATGGTACCGCTG ACATTGAATTCCTGAAGAATGTTATGAGAAATGCTTACAGAGAGTTGGATACCTATCTTAGGAATCACCGCGGCATCCGCCCATGGCCCTGA
AA sequence Show only first row Show all	>Lus10003451 pacid=23164894 polypeptide=Lus10003451 locus=Lus10003451.g ID=Lus10003451.BGIv1.0 annot-version=v1.0 MTTDFLEVHLNSSANDVWGAITAGTALYPKAMRDLYQQIKSIKGDGFTSGSMRTITFGYAYDRVVKNATEEIRDVDHENLTIKSRFTGDGGFVPKLFATF DMKITVVRLSREMRDPGCMIKWEFTYDRGYGTADIEFLKNVMRNAYRELDTYLRNHRGIRPWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10003451 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	1.7	0.9232
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	15.5	0.8840
					Lus10014873 [exp]	18.1	0.9063
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	20.5	0.8983
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	22.8	0.9017
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10036251 [exp]	25.5	0.8990
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	25.7	0.8906
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	28.5	0.8783
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	30.2	0.8904
AT4G12840			Protein of unknown function (D...		Lus10008748 [exp]	30.4	0.8455

Compare expression of checked genes

Lus10003451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.