Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 107 / 6e-28 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 103 / 2e-26 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 103 / 2e-26 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G05680 101 / 5e-26 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT4G15490 101 / 7e-26 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 101 / 9e-26 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 100 / 1e-25 UDP-Glycosyltransferase superfamily protein (.1) AT1G05560 97 / 2e-24 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT2G31750 96 / 5e-24 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT3G46660 96 / 1e-23 UGT76E12 UDP-glucosyl transferase 76E12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015753 [exp] 248 / 1e-81 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 225 / 5e-73 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 169 / 3e-51 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015748 [exp] 157 / 8e-50 AT1G05680 121 / 6e-33 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10015751 [exp] 163 / 6e-49 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 159 / 4e-47 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 158 / 6e-47 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 157 / 1e-46 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 157 / 1e-46 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G084900 [exp] 145 / 3e-42 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 134 / 6e-38 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 128 / 8e-36 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 128 / 1e-35 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 126 / 6e-35 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 100 / 2e-25 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.002G236400 [exp] 100 / 3e-25 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Potri.014G146000 [exp] 99 / 5e-25 AT4G15550 429 / 2e-147 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.016G020400 [exp] 99 / 6e-25 AT1G22340 483 / 4e-168 UDP-glucosyl transferase 85A7 (.1) Potri.006G055600 [exp] 97 / 3e-24 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003452 pacid=23182472 polypeptide=Lus10003452 locus=Lus10003452.g ID=Lus10003452.BGIv1.0 annot-version=v1.0 ATGAAAAGGGTGGGGGATCTAGGCAAAATAGTGGCGTGGGGGAGTCAAGAGGAGGTGCTTTCGCACCCTTCGATTGCATGTTTCGTGAGCCATTGTGGGT GGAACTCGACATTGGATGGATTGGTAGCCGGAGTTCCGCTCCTGTGCTGGCCTTTCTGTTTCGATCAGTTCCACAACAAGAAGTACATTTGTGAAACTTG GAAGATTGGTTTGGAATTGAAGGCTGAAAATGGGACGGATGCAGGCATGATTTTGAAGACGGAGATTGTGAGGAAGATCGATGAGTTGGTTTATGATGAA ACCATAAAATCCAATTCAATGAAGCTTAGGGAAATGGCTAGAGATACTACTCGTGGTAGTACTACTGATTATGCAGGGTCTTCATTCCTCAGGTTTGAAG CATTTGTCACAGATCTTAACGGCCAAGAAGTATTTTGA
AA sequence Show only first row Show all	>Lus10003452 pacid=23182472 polypeptide=Lus10003452 locus=Lus10003452.g ID=Lus10003452.BGIv1.0 annot-version=v1.0 MKRVGDLGKIVAWGSQEEVLSHPSIACFVSHCGWNSTLDGLVAGVPLLCWPFCFDQFHNKKYICETWKIGLELKAENGTDAGMILKTEIVRKIDELVYDE TIKSNSMKLREMARDTTRGSTTDYAGSSFLRFEAFVTDLNGQEVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003452 [exp]	0	1
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	9.3	0.7322
AT3G58060			Cation efflux family protein (...		Lus10029300 [exp]	13.8	0.7214
					Lus10018953 [exp]	51.6	0.6995
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	58.2	0.7080
AT3G60380			unknown protein		Lus10028193 [exp]	58.9	0.6804
					Lus10015043 [exp]	95.1	0.6938
AT3G02920		ATRPA32B	Replication protein A, subunit...		Lus10015505 [exp]	97.1	0.6443
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10023901 [exp]	103.3	0.6828
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	104.0	0.6705
					Lus10038978 [exp]	110.1	0.6879

Compare expression of checked genes

Lus10003452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.