Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 274 / 3e-87 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 214 / 4e-64 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G36970 211 / 7e-63 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 207 / 3e-61 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 207 / 3e-61 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22370 206 / 4e-61 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22360 206 / 1e-60 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT3G22250 204 / 2e-60 UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 201 / 5e-59 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT4G15500 189 / 2e-54 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015751 [exp] 699 / 0 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 694 / 0 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 692 / 0 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 665 / 0 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 590 / 0 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 543 / 0 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 537 / 0 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015752 [exp] 525 / 0 AT3G02100 141 / 3e-38 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 407 / 3e-139 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123500 [exp] 335 / 5e-111 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 333 / 4e-110 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 329 / 2e-108 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 322 / 5e-106 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 284 / 9e-91 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 242 / 1e-74 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073800 [exp] 234 / 1e-71 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 234 / 1e-71 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022300 [exp] 216 / 8e-65 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 216 / 2e-64 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003453 pacid=23182499 polypeptide=Lus10003453 locus=Lus10003453.g ID=Lus10003453.BGIv1.0 annot-version=v1.0 ATGCCGGCGACCAAGAAGAAACCACATGTGCTTCTGGTTCCACATCCAGCACAAGGCCATGTTTTCCCCATGCTCAAGTTGGCACATAAGTTGACCGACC ATGGAATCAGTGTCACTGTCACTAATTTGGATTTCATTCATCGCATGATTATAGCAGAGGAGCAGCAGGTCCATGGTGGGATCAGGCTGGTTTCACTTCC TGATGGATTCCGTTCCAATTCCGACAGCAGTGATCATAGAATGTTCACAGAGGCTGTGAAGAAAGTACTGCCAATTCAAATACGGGAGCTGCTGATGAAT CAGCAGCAGTCTCAAAGTAATGATGAAGAGCAAGAGAAGTTCAGTTGGGTGATTGCCGATGCTTTCCTTTCTGGAGTGTTTATTGTTGCCAAGGAAATGG GGATCAAAACGGCTGCGCTTTGGACTGCCTCGCTGGAGAATTTCGCTCTGATGCTTCATATTCCTCAACTGATTGAGGCTGGCACTATTGATGAAAACGG ATTCTTAATAGACAGAGAGGTAGCGGTTTCGATATCTGAGGAGATACTTGCTTGGAAAGCTAACGAGTTACCGTGGAGTTATCAACCTGAAGAACTCCAG CCCTTTCTTTTCAAAAACTACTATGCCCAGCCATCCAAGCACTGTTTGCTTTTCGACCACGTTATATTCAACTCGTTTCATGAGCTCGAACCATCAGTTT TTCAATTGTTCCCACATTTCCTCCCAATAGGTCCATTGGTTACAAATTCAACTAATTCAGGAGGAAGCTTTTGGCATCAGGATGAAACTTGCCTGGCCTG GCTCGACAAGCATCCTCCAAAATCAGTAATATACATTGCATTTGGAAGCATCGCAGTTCTAAGTCAACAGCAGTTTCAGGAACTTGCATTGGGTCTTGAA CTGACAGGAAGACCATTCCTGTGGGTGATCAGAACAGATTTTGTGCAAGGGTCAGGTCTGGAGTTCCCATATGGATACCTGGAGAGGGTTTCGAATCGAG GGAAGATAGTGGAGTGGACGAATCAAGAGCAAGTGCTTTCTCATCAATCCATAGCATGTTTCCTAAGCCTTTGTGGATGGAACTCGACGTTGGATGGGTT GTGGTCTGGAGTTCCATTTTTGTGTTGGCCTTTTTGTTTTGATCAGTTCCGTAACAAGGAGTCTATATGTGAAGCTTGGAAGGTTGGCCTGAAGTTGGAG GCTGAAGATGGAACTGGGTTGATCACCATGTCTGAAATTGCTAGCAAGGTTGCAGAACTTCTAAATAATGATACCATAGGAGGTAACACAATTAGGCTGA GGGGACTTGTTCAGGCGAGTGTGAACAAGGATGGCACTTCTTTCCACAATTTCTCGAGTTTCATCGATAATTTGAGTTCTTAG
AA sequence Show only first row Show all	>Lus10003453 pacid=23182499 polypeptide=Lus10003453 locus=Lus10003453.g ID=Lus10003453.BGIv1.0 annot-version=v1.0 MPATKKKPHVLLVPHPAQGHVFPMLKLAHKLTDHGISVTVTNLDFIHRMIIAEEQQVHGGIRLVSLPDGFRSNSDSSDHRMFTEAVKKVLPIQIRELLMN QQQSQSNDEEQEKFSWVIADAFLSGVFIVAKEMGIKTAALWTASLENFALMLHIPQLIEAGTIDENGFLIDREVAVSISEEILAWKANELPWSYQPEELQ PFLFKNYYAQPSKHCLLFDHVIFNSFHELEPSVFQLFPHFLPIGPLVTNSTNSGGSFWHQDETCLAWLDKHPPKSVIYIAFGSIAVLSQQQFQELALGLE LTGRPFLWVIRTDFVQGSGLEFPYGYLERVSNRGKIVEWTNQEQVLSHQSIACFLSLCGWNSTLDGLWSGVPFLCWPFCFDQFRNKESICEAWKVGLKLE AEDGTGLITMSEIASKVAELLNNDTIGGNTIRLRGLVQASVNKDGTSFHNFSSFIDNLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	0	1
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	4.4	0.9047
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032218 [exp]	6.9	0.8686
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	7.2	0.9012
					Lus10017966 [exp]	8.5	0.8845
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	9.3	0.8976
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	9.7	0.8829
AT5G01740			Nuclear transport factor 2 (NT...		Lus10029439 [exp]	9.8	0.8304
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	11.5	0.8822
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	12.4	0.8816
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	13.5	0.8621

Compare expression of checked genes

Lus10003453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.