Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 261 / 7e-82 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 228 / 9e-69 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 226 / 2e-68 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22360 223 / 6e-67 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 220 / 5e-66 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 214 / 6e-64 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 210 / 3e-62 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT2G36970 207 / 6e-61 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 189 / 1e-54 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT3G22250 187 / 5e-54 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015749 [exp] 776 / 0 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 766 / 0 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 713 / 0 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 686 / 0 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 602 / 0 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 542 / 0 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 534 / 0 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015752 [exp] 416 / 4e-144 AT3G02100 141 / 3e-38 UDP-Glycosyltransferase superfamily protein (.1) Lus10015753 [exp] 402 / 2e-136 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123500 [exp] 348 / 7e-116 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 340 / 9e-113 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 332 / 1e-109 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 331 / 4e-109 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 303 / 7e-98 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 231 / 4e-70 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 231 / 4e-70 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 229 / 1e-69 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.009G095500 [exp] 217 / 7e-65 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 211 / 8e-63 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003454 pacid=23182488 polypeptide=Lus10003454 locus=Lus10003454.g ID=Lus10003454.BGIv1.0 annot-version=v1.0 ATGGCGACCAAGAAGAAGAAACCACATGTTCTTCTGGTTCCACATCCAGCACAAGGTCATGTCTTCCCAATGCTGAAGCTGGCACATAAGCTTACCGACC ATGGAATCAGCGTCACCGTTGCTAATTTGGATTTCATCCACCGCAAGATTATACCTCAGCAACAACAGGGGAAGCAGAGCCATGGTACTGATGGTGGTGG TATCAGAATGGTTTCGCTTCCTGACGGATTGGGTTCCCATTCTGACAGCATCGACGTAGTGTTGCGTACGGAGACCGTGCAGAAAGTACTTCCAGTTCGA TTGCGGGAGCTGCTGATTCAGCAGCAGTCTCTAAGCAATGATGATGAAGAACAAAAGTTCAGTTGGATCATTGCCGATGCATGCCATTTTGGAGTGTTTA TTGTTGCCAGGGAAATGGGGATCAAAACGGTTGCGCTTTGGACCGCCTCGCAGGAGAATTTGGCTCTAGTGTTGCGTATTCCTCAGCTGATCGAGACCGG CACTATCAATGAAAACGGATTTTTAGTAGACAAAGAGTTGCCGATTTCGATATCTGAAGAGATGGTTGCTTGGAAAGCTAACGAGTTACCATGGAGTGCT CCATCTGAAGAACTCCAGTCCTTTTATTTCAAGAACTGTTATTCGAAGCCATCGGAGCACTGTTCGCTTTACCACCACGTCATAGTCAACTCATTTCATG AACTGGAACCGTCAGCTTTTCAACTGTTTCCAAACTTCCTCCCAATAGGTCCTTTGGTTATAAATTCAGCTAATTCAGGAGGAAGCTTTTGGCGTCAGGA TGAAACTTGCCTGACCTGGCTCGACAACCATCCTTCGAAATCAGTCATATACGTCGCATTTGGAAGCATCACAATTCTGAGTCAAAAACAGTTTCAGGAA CTTGCATTGGGACTTGAACTGGCAGGAAGACCATTCCTCTGGGTGATAAGAACGAATTTCGTGCAAGGACCAGGAGGGTCAGGTCTGGAATTTCCAAATG GGTACCTCGAAAGGGTTGCGAATATGGGGAAAATAGTGGAGTGGACGAATCAAGCACGAGTGCTTTCTCACCCTTCCGTTGGGTGTTTCGTGAGTCATTG CGGATGGAACTCCACACTGGAAGGGTTGTGGTGTGGAGTTCCGTTTCTGTGCTGGCCTTACTTTTTGGATCAGTTCCATAACAAGGAGTCTATATGTGAA GCTTGGAAGGTTGGCCTGAAACTGAAGGCTGAAGAAGATGGAAGTGGACTGATCACCATGTCTGAAATTGCTAGCAAGGTTGAACAACTTCTTAATGATG AAACCATAAAAGGCAATGCAAATAGGTTGAGGGAAGTTGCTAGGGAAAGTGTGAATCAGGGTGGCTCTTCTTTTCACAGTTTCTCGAGTTTCGTCAACCA ATTATGTTCTAATGATGTGGCTTGTGAGTAG
AA sequence Show only first row Show all	>Lus10003454 pacid=23182488 polypeptide=Lus10003454 locus=Lus10003454.g ID=Lus10003454.BGIv1.0 annot-version=v1.0 MATKKKKPHVLLVPHPAQGHVFPMLKLAHKLTDHGISVTVANLDFIHRKIIPQQQQGKQSHGTDGGGIRMVSLPDGLGSHSDSIDVVLRTETVQKVLPVR LRELLIQQQSLSNDDEEQKFSWIIADACHFGVFIVAREMGIKTVALWTASQENLALVLRIPQLIETGTINENGFLVDKELPISISEEMVAWKANELPWSA PSEELQSFYFKNCYSKPSEHCSLYHHVIVNSFHELEPSAFQLFPNFLPIGPLVINSANSGGSFWRQDETCLTWLDNHPSKSVIYVAFGSITILSQKQFQE LALGLELAGRPFLWVIRTNFVQGPGGSGLEFPNGYLERVANMGKIVEWTNQARVLSHPSVGCFVSHCGWNSTLEGLWCGVPFLCWPYFLDQFHNKESICE AWKVGLKLKAEEDGSGLITMSEIASKVEQLLNDETIKGNANRLREVARESVNQGGSSFHSFSSFVNQLCSNDVACE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003454 [exp]	0	1
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	2.2	0.8394
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	6.3	0.8272
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	7.7	0.8319
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10037484 [exp]	13.0	0.8352
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	15.1	0.8264
AT5G41761			unknown protein		Lus10000541 [exp]	15.8	0.8182
					Lus10041394 [exp]	25.8	0.8280
AT3G09860			unknown protein		Lus10023014 [exp]	27.9	0.8260
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	29.9	0.7977
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	30.5	0.8058

Compare expression of checked genes

Lus10003454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.