Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 291 / 2e-93 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 237 / 1e-72 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 237 / 2e-72 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22360 235 / 7e-72 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 233 / 4e-71 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22400 232 / 1e-70 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 227 / 1e-68 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT2G36970 224 / 2e-67 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 196 / 3e-57 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT4G15500 195 / 8e-57 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003454 [exp] 765 / 0 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 742 / 0 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 736 / 0 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 715 / 0 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 615 / 0 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 574 / 0 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 563 / 0 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015752 [exp] 451 / 4e-158 AT3G02100 141 / 3e-38 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 418 / 4e-143 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123500 [exp] 355 / 1e-118 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 349 / 3e-116 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 345 / 2e-114 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 332 / 1e-109 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 306 / 2e-99 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 263 / 2e-82 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 263 / 2e-82 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 255 / 1e-79 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.002G098400 [exp] 239 / 2e-73 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022300 [exp] 228 / 2e-69 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003455 pacid=23182494 polypeptide=Lus10003455 locus=Lus10003455.g ID=Lus10003455.BGIv1.0 annot-version=v1.0 ATGGCGACCAAGGAGAAGAAACCACATGTGCTTCTGGTTCCACATCCAGCACAGGGCCATCTTTCCCCAATGCTCAAGTTGGCACATAAGCTGACTGACC AAGGAATCAACGTCACAGTCGCTAATTTGGATTTCATCCACCAGAAGATTATACCTCAGCAGCAGGGGAAACAGAGCCATGGTGTTTCTGGTTTCAGGCT GGTTTCGCTTCCTGACGGATTTGATACCGAGTCCGACAGCAACGATGTAGTATTGCTTACAGAGACTGTGCAGAAATTACTTCCGGTTCGATTACGGGAG CTGCTGATTCAGCAACAGTCTCTAAGTAGTAATGATGAAGAGCAAGAGAACTTCAGTTGGGTCATTGCTGATGCATTCAGTTTCGGAGTGTTTATTGTTG CCAAGGAAATGGGGATCAAAACGGCTGCGCTTTGGACCGCCTCGCTGGAGAATTTCGCTCTGATGTTGCGTATTCCTCAACTCATCGAGTCCGGGACTAT TGATGAGAACGGATTCTTAATAGACAAAGAGACACCGATTTCGATATCTGAAGAGATAGTTGCTTGGAAAGCTAACGAGTTACCATGGAGTGTTAAATCT GAAGAACTCCAGTCCTTTTTTTTCAAGTACTATTATACCAAGCCATCTAAGTACTGTTCGCTTTTCGACCACGTAATAGTCAACTCATTTCACGAACTGG AACCGTCAGCTTTTCAACTGTTCCCACACTTCCTCCCAATAGGTCCTTTGGTTAGTACTGATTCAACTTCAGGAGGAAGCTTTTGGCGTCAGGATGAAAC TTGTTCAACTTGGCTCGACAGGCATCCTCCGAAATCAGTCATATACGTTGCATTCGGAAGCATCGCGGTTCTGAGTCAACAGCAGTTTGAGGAACTTGCA TTAGGACTTGAACTTACAGGAAGGCCATTCCTCTGGGTGATCAGAACAGATTTTGTGATGCAAGGGTCGGGTTTGCAGTTCCCGGATGGATACCTGGTGA GGGTTGTGAATCGGGGGAAAATGGTGGAGTGGACGAACCAAGAGCAAGTGCTTTCGCACCCTTCCGTAGGGTGTTTCCTGAGCCATTGCGGATGGAACTC GACGTTGGATGGGTTGTGGTGCGGAGTTCCGTTTCTGTGTTGGCCTTACTTTGTGGATCAGTACCATAACAAGGAGGCTATATGTGAAGCTTGGAAAGTT GGTCTGAAACTGAAGGCTGAAGAAGATGGAACTGGATTGATCACCATGTTTGAAATTGCTAGCAAGGTTGAAGAACTTCTTAGTGATGATACCATAAAAG AGAACGCAAATAGGTTGAGGGAAGTTTGTAGGGAAACTGTGAATGAGGGTGGCTCTTCGTTTCAGAGTTTCTTGAGTTTCATCAACCAACTGTGTCTTTA G
AA sequence Show only first row Show all	>Lus10003455 pacid=23182494 polypeptide=Lus10003455 locus=Lus10003455.g ID=Lus10003455.BGIv1.0 annot-version=v1.0 MATKEKKPHVLLVPHPAQGHLSPMLKLAHKLTDQGINVTVANLDFIHQKIIPQQQGKQSHGVSGFRLVSLPDGFDTESDSNDVVLLTETVQKLLPVRLRE LLIQQQSLSSNDEEQENFSWVIADAFSFGVFIVAKEMGIKTAALWTASLENFALMLRIPQLIESGTIDENGFLIDKETPISISEEIVAWKANELPWSVKS EELQSFFFKYYYTKPSKYCSLFDHVIVNSFHELEPSAFQLFPHFLPIGPLVSTDSTSGGSFWRQDETCSTWLDRHPPKSVIYVAFGSIAVLSQQQFEELA LGLELTGRPFLWVIRTDFVMQGSGLQFPDGYLVRVVNRGKMVEWTNQEQVLSHPSVGCFLSHCGWNSTLDGLWCGVPFLCWPYFVDQYHNKEAICEAWKV GLKLKAEEDGTGLITMFEIASKVEELLSDDTIKENANRLREVCRETVNEGGSSFQSFLSFINQLCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003455 [exp]	0	1
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	3.3	0.9674
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	4.0	0.9625
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	6.7	0.9520
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	7.5	0.9396
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	8.2	0.9506
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	9.7	0.9488
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	11.0	0.9383
AT1G10810			NAD(P)-linked oxidoreductase s...		Lus10010566 [exp]	11.7	0.8788
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	12.0	0.9434
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	13.7	0.9262

Compare expression of checked genes

Lus10003455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.