Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 92 / 2e-22 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 63 / 5e-12 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT1G22360 61 / 2e-11 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT2G23250 61 / 2e-11 UGT84B2 UDP-glucosyl transferase 84B2 (.1) AT2G31790 58 / 3e-10 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 58 / 3e-10 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT4G01070 58 / 4e-10 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT3G21800 58 / 4e-10 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT1G22370 57 / 6e-10 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G01390 57 / 6e-10 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015744 [exp] 279 / 2e-93 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 220 / 1e-70 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 218 / 1e-69 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 217 / 2e-69 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 215 / 2e-68 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015752 [exp] 211 / 2e-68 AT3G02100 141 / 3e-38 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 211 / 3e-67 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 210 / 2e-66 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 203 / 6e-64 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123500 [exp] 111 / 4e-29 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 110 / 1e-28 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 101 / 1e-25 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 84 / 2e-19 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 84 / 4e-19 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G049600 [exp] 66 / 5e-13 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.016G105300 [exp] 66 / 5e-13 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.016G105400 [exp] 66 / 5e-13 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.014G096100 [exp] 65 / 1e-12 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.016G020700 [exp] 64 / 3e-12 AT1G22360 364 / 4e-123 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003457 pacid=23182495 polypeptide=Lus10003457 locus=Lus10003457.g ID=Lus10003457.BGIv1.0 annot-version=v1.0 ATGGAGAGCTTGGCTTTGATGTTGCTCATTCCTCAGCTGATCCAGGATGGGACTATAGACGAAAACGGATCTTTAATAAACAAAGACCTGCCGGTTTCCC TGTGTCAAGAAATCCCATCCTGGAAAGCAAACGAATTACCATGGAGCTGTCAACCTGACGAAATTCAAACGTTCATTTTCAGACGTTACTACGTGAACCC AGCAGAGTACTATGCATTGTTCGACTGCTTCATCGTCAACTCGTTCCGCGAACTTGAGAATTCAGCTTTCGAATTGTACCACGACATCCTCCCAATAGGT CCACTGGTCACAAATTCCACTACTTCAGGAAAATTCCACAACCTAGGAAGCTTCTGGCGTCAGGATGAAACTTGCTCGACCTGGCTCGACAAACATCCTC TGAGGTCAGTCATATACGTTGCGTTCGGAAGCATCGTGGACCTGAACTCGCGACAATTCCAGGAGCTAGCAATGGGTCTTGAAATGACAGAAAACCTTTC CTCTGGGTAG
AA sequence Show only first row Show all	>Lus10003457 pacid=23182495 polypeptide=Lus10003457 locus=Lus10003457.g ID=Lus10003457.BGIv1.0 annot-version=v1.0 MESLALMLLIPQLIQDGTIDENGSLINKDLPVSLCQEIPSWKANELPWSCQPDEIQTFIFRRYYVNPAEYYALFDCFIVNSFRELENSAFELYHDILPIG PLVTNSTTSGKFHNLGSFWRQDETCSTWLDKHPLRSVIYVAFGSIVDLNSRQFQELAMGLEMTENLSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003457 [exp]	0	1
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	6.3	0.8970
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	14.1	0.8998
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	19.7	0.8600
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	26.6	0.8905
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	26.7	0.8474
					Lus10030905 [exp]	27.4	0.8532
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	30.4	0.8487
					Lus10007097 [exp]	31.2	0.8746
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	32.6	0.8792
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	39.7	0.8714

Compare expression of checked genes

Lus10003457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.