Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07920 1026 / 0 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) AT5G63770 634 / 0 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G57690 86 / 2e-17 ATDGK4 diacylglycerol kinase 4 (.1) AT4G30340 85 / 3e-17 ATDGK7 diacylglycerol kinase 7 (.1) AT2G18730 84 / 7e-17 ATDGK3 diacylglycerol kinase 3 (.1) AT4G28130 78 / 8e-15 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT2G20900 76 / 3e-14 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015742 [exp] 1291 / 0 AT5G07920 1053 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10021625 [exp] 1190 / 0 AT5G07920 1101 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10034701 [exp] 810 / 0 AT5G07920 746 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10010896 [exp] 573 / 0 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10012719 [exp] 572 / 0 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10034702 [exp] 390 / 1e-132 AT5G07920 400 / 8e-137 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10015514 [exp] 89 / 3e-18 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10019987 [exp] 89 / 3e-18 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 86 / 4e-17 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066300 [exp] 1115 / 0 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.005G070900 [exp] 593 / 0 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.007G097900 [exp] 588 / 0 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.006G174700 [exp] 89 / 1e-18 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.018G096700 [exp] 89 / 2e-18 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.013G148500 [exp] 74 / 2e-13 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.001G408500 [exp] 72 / 5e-13 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain CL0006 [flax] [poplar] C1 PF00130 [flax] [poplar] C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain)
Representative CDS sequence Show only first row Show all	>Lus10003460 pacid=23182492 polypeptide=Lus10003460 locus=Lus10003460.g ID=Lus10003460.BGIv1.0 annot-version=v1.0 ATGGACGACGATAGAGAAATTGGGATGCTGTTCCCTGGTTGGAACAGCAAGAACCCTACTGAATCTTATCTTTTCATGTTATCCTGCTTCATTGCTGCTT TGGTTGGGATTTTGACCATAACTTACACGGCTTTTCAATGGAGAAGAAATATCAATCTGAGTTGGATGAAGGCTATAGCGAGATCTAAAAAGAATCCGAC AATTAGGCACAAGGTTCCTGCAGCAGCGCATACATGGGTGCTTGAATCAGCAACTCGTGGGAAGAATCTGAATTGTTGTGTTTGTTTGAAATCCATGTCT CCTTCTCAAACACTCGGTCCTATGGTGGCATCAGATAGTTTTATTCACTGTTGCAGTGTTTGCGGTGCAGCAACTCACCTAGGATGCTCTAGTAATGCAC CCAAGGACTGCAAATGTGTTTCTATGGTTGGATATGAGAATGTCATGCATCAATGGTTTGTTCGTTGGACTGAGATCATGGATCAACCTGATGAGACTTC CTTTTGTAGTTATTGTGAAGAACCATGTAGCGCATCTTTTCTTGGCGGATCACCAATATGGTGTTGCTTTTGGTGTCAGCGACTTGTACATGTTGATTGC CACAGTAGTATGTCAAGTGAAACCGGTGATATTTGTGATTTAGGTCCTTTTAGGAGGTTGATTTTATCTCCCCTTTATGTTCGTGAACTTCACCAAAATT TACCAGGTGGGTTTTTTAGTTCAATCACACATGGAGCTAATGAAATTGCTTCATCGGTGCGTGCAAGTATCAGGAGTCAAAGCAAGAAATACAAGCATGA GAATGGAAACCCCATTGACACTGGAAATAGTGGTGGTATTGGTGATCCGTCCACTGAAAGCACAGCTGACGCCCATCCTTATGCAAATTGCTGTAATGGT GGGGAGGAAAATTGTGCTGGTAGCTTCAATGTGGGAAGTCCCCAACATGATAGCGTGGTTGTGGATAGTAAGTTGGAATCAAGTTCTAGTTTGAAAAGGA GCGGTTCACTAAATCAGAAGGATGAATCTCATGTTTTAGGGATGAAACAGAGACATGAGATAAACGATTTGCCGTCTGATGCCAGACCCCTCCTTGTTTT TATTAACAAGAAGAGTGGTGCTCGGCGTGGAGACTCCCTTAAGCAACGCCTGAACTTGCTTCTGAATCCTGTTCAGGTGTTCGAGTTGAGTTCAGCACAG GGGCCTGAAGTAGGCCTTTATCTTTTCAGGAAGGTGCCTCACTTTAGGATTCTGGTATGTGGAGGAGATGGGACAGTGGGCTGGGTTCTTGATGCTATAG AGAAGCAAAATTTTGTCTCTCCGCCTCCTGTCGCTATTCTTCCTGCTGGAACTGGAAATGATCTAGCCAGAGTACTATCCTGGGGAAGTGGTTTGGGAGC ATTGGAAAGACAAGGAGGTGTCGGGTGTGATGCCAAAGTTGCTCTTGAAATTCACAATCTGAGGGAGGAAAATCCCGAGAAGTTCTATAACCAGTTTATG AATAAGGTTCTGTATGCACGAGAGGGTGCAAAGAACATAATGGACCGTACATTCGCAGATTTTCCATGGCAAGTCAGAGTGGAGGTAGACGGGGTAGAGA TAGAGGTCCCAGAGGATGCAGAAGGTGTACTTGTTGCGAACATTGGAAGTTACATGGGCGGTGTCGACCTTTGGCAGAATGAGGATGAGTATTATGATAA CTTTGATCCGCAATCTATGCATGATAAGTTGCTTGAAGTTGTGAGCATCTCTGGAACGTGGCACTTGGGAAAGCTTCAGGTGGGACTTTCACGTGCTCGT CGACTTGCACAAGGGCAATTGATCAAGATACAGCTGTTTGCTCCTTTGCCTGTACAAATAGACGGGGAGCCTTGGCTTCAGCGACCGTGTACCTTACTCG TATCCCATCACAGCCAGGCGTTTATGCTGAAAAGAGCAGGAGAAGAACCTCTTGGGCATGCAGCTGCTATAATAGCGGACGTACTTGAAAACGCAGAGAC TAATAATGTCATTAACCTCCCACAAGTCCCCACTCTTGTGGTCTTTTGTTTGATGGATGATGATCTTAGCTAA
AA sequence Show only first row Show all	>Lus10003460 pacid=23182492 polypeptide=Lus10003460 locus=Lus10003460.g ID=Lus10003460.BGIv1.0 annot-version=v1.0 MDDDREIGMLFPGWNSKNPTESYLFMLSCFIAALVGILTITYTAFQWRRNINLSWMKAIARSKKNPTIRHKVPAAAHTWVLESATRGKNLNCCVCLKSMS PSQTLGPMVASDSFIHCCSVCGAATHLGCSSNAPKDCKCVSMVGYENVMHQWFVRWTEIMDQPDETSFCSYCEEPCSASFLGGSPIWCCFWCQRLVHVDC HSSMSSETGDICDLGPFRRLILSPLYVRELHQNLPGGFFSSITHGANEIASSVRASIRSQSKKYKHENGNPIDTGNSGGIGDPSTESTADAHPYANCCNG GEENCAGSFNVGSPQHDSVVVDSKLESSSSLKRSGSLNQKDESHVLGMKQRHEINDLPSDARPLLVFINKKSGARRGDSLKQRLNLLLNPVQVFELSSAQ GPEVGLYLFRKVPHFRILVCGGDGTVGWVLDAIEKQNFVSPPPVAILPAGTGNDLARVLSWGSGLGALERQGGVGCDAKVALEIHNLREENPEKFYNQFM NKVLYAREGAKNIMDRTFADFPWQVRVEVDGVEIEVPEDAEGVLVANIGSYMGGVDLWQNEDEYYDNFDPQSMHDKLLEVVSISGTWHLGKLQVGLSRAR RLAQGQLIKIQLFAPLPVQIDGEPWLQRPCTLLVSHHSQAFMLKRAGEEPLGHAAAIIADVLENAETNNVINLPQVPTLVVFCLMDDDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	0	1
AT1G01770			unknown protein		Lus10036349 [exp]	1.7	0.8726
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	4.0	0.8538
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10015268 [exp]	6.5	0.8460
AT1G16040			unknown protein		Lus10015585 [exp]	9.6	0.8200
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	11.2	0.8211
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	11.5	0.8437
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10027958 [exp]	11.7	0.8248
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	13.2	0.8618
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	15.9	0.8182
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	17.2	0.8182

Compare expression of checked genes

Lus10003460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.