Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62470 681 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 679 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 676 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G73400 243 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 236 / 4e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 232 / 1e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G26500 229 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 223 / 5e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 209 / 9e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 207 / 1e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015741 [exp] 1084 / 0 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 271 / 7e-83 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 271 / 2e-82 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 243 / 2e-72 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 218 / 5e-62 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021991 [exp] 215 / 2e-61 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 209 / 5e-59 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 202 / 2e-57 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031837 [exp] 196 / 3e-55 AT3G15200 499 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121400 [exp] 728 / 0 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G191200 [exp] 360 / 8e-121 AT3G62470 382 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 261 / 7e-79 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 238 / 2e-70 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 226 / 8e-67 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 224 / 2e-64 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G115500 [exp] 212 / 6e-61 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G086100 [exp] 211 / 7e-61 AT1G26500 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 208 / 2e-59 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 206 / 4e-58 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003461 pacid=23182487 polypeptide=Lus10003461 locus=Lus10003461.g ID=Lus10003461.BGIv1.0 annot-version=v1.0 ATGGTTCTCTCCACTATAAACCGACGCAAATTGCTCAACCAACTTTGGAGTTCATCGCGAAACCACTCGGATCGCCATGGACCACTCAGCTCAACCTCCA AGCTACTCGATGTGGATCTCCGACAAGGAGAAGACGGAGCGCCACGAAAACGGCTCCGGCGAGGAGAGCAAATCCTGTTGGCTCGTGGTGGCTCTCTGTC CCTGTCTCGTTCTCTTTACTCTCCTCCTAATCATCGTCTCTATAGTTCTAGCAGTCAAGTTCCGCATCTTCTGCCACACTCCTCTCGGCTCTCTCATCTA CAAAAACCACTGCCACCACTAGTTCCGCGGGAAGTCTCACAATCGATTAGCAGACGGTACTGTAGCGGCGATTCCGTTTCCGATTCCGATTCCGACGCTG AATTTTCGGGCAGTGATGTGAAGGAAGAAATGAGAAATGGCGGTGCAGATCCAGCGGAGGTAGATAAGGTATGCAAGGTGATCGACGAATTGTTTCTGCT AGACCGTAACATGGAAGCAGTTCTTGACGAATGTAGGATCAACTTGTCACATGATTTGGTTGTGGATGTGCTGGAGAGGTATCGCCATGCTAGGAAACCG GCGATGAGGTTCTTCAACTGGGCGGGGCAGAGGCCTGGTTTCAGCCATGACTCGAGGACTTGCAATGCGATGATGAGCATACTGGCGAAGACTCGGCAGT TGGAGACTATGGTGTCGATGCTTGAAGACATGGGGGAGAAGGGGCTTCTGACAATGGATACGTTTCTGATTGCTATGAGAGCCTTTGCTGCGGCCAAGGA GAGGAAAAAGGCTGTGGGGATGTTTGAGTTGATGAAGAAGTATAAATTCAAATTAGGTGCCGAGACGTTGAATTCTCTGCTGGATAGTCTGGGAAGAGCC AAGCTTGCTAAAGAGGCTAAAGTTCTGTTTGGAAGGCTTGAACATAGGTTTACTCCGAATCTGAGGACCTATACGGTGTTGCTTAATGGTTGGTGCAAGG TGAAGAATTTAATGGAAGCTGGGAGAGTGTGGAACGAGATGATTGAGAAAGGGTTTAAACCGGATGTTGTTGCTCATAACATCATGCTTGAAGGGTTGTT GAAGAGTAGGAAGAGGTCTGATGCTATCAAGTTGTTTGAGATCATGAAGGCTAAAGGTCCGACCCCTGATGTCCGGAGCTACACGATTCTGATACGGTAT TTGTGCAAACAAAGTAGGATGGAAGAGGCGATAGACTATTTCGACGAAATGGTTGATTCAGGGTGCGAGCCAGATGTTGCGGTTTATGCATGTTTGATCT CCGGGTTTGGGAACCAGAGGAAAATGGACATGGTTTTCGAATTGTTGCAAGAGATGAAAGAAAAGAGCTGCCCGCCGGATGCTCAGACCTATAATGCACT TATTAAGCTGATGGTCCGGAGAAGGCTTCCTGATGATGCTGTGAAGGTGTACAAGAAGATGATTCAGAACGGGATGGAACCCACAATTCATTCGTATGAC ATGATCATGAGATCCTACTTTTACATCAGAAACTATGAAATGGGCCGTGCTGTGTGGGATGAGATGATTAGTAGGGGTTGTTGCCCTGATGATAACTCGT ATACTGTCTTCATACGAGGGTTAGTAAGTCAGGGGAGATCGGCAGATGCTTGCAAGTACTTGGAAGAAATGATGGAGAAAGGAATGAAAATGCCTCAGCT AGACTACAACAAGTTTGTAGCTGACATTTCTAAGGCCGGCACACCGGCTGCATTTGAAGCTCTAGCCCAGAAAATGAACTTCGTGGGGAATTTCGGGACG GCCAGTGGCTTGACGAGAAAGTCTGAAGCAATTAATAACAGAATCAATCGACATCGGCGGGCTACCGAGAGATCGTCCTTTCGGGTTTTGGAGGAAGATG AGTATTCTTATTACAATCCCTCTGGGGGTTGA
AA sequence Show only first row Show all	>Lus10003461 pacid=23182487 polypeptide=Lus10003461 locus=Lus10003461.g ID=Lus10003461.BGIv1.0 annot-version=v1.0 MVLSTINRRKLLNQLWSSSRNHSDRHGPLSSTSKLLDVDLRQGEDGAPRKRLRRGEQILLARGGSLSLSRSLYSPPNHRLYSSSSQVPHLLPHSSRLSHL QKPLPPLVPREVSQSISRRYCSGDSVSDSDSDAEFSGSDVKEEMRNGGADPAEVDKVCKVIDELFLLDRNMEAVLDECRINLSHDLVVDVLERYRHARKP AMRFFNWAGQRPGFSHDSRTCNAMMSILAKTRQLETMVSMLEDMGEKGLLTMDTFLIAMRAFAAAKERKKAVGMFELMKKYKFKLGAETLNSLLDSLGRA KLAKEAKVLFGRLEHRFTPNLRTYTVLLNGWCKVKNLMEAGRVWNEMIEKGFKPDVVAHNIMLEGLLKSRKRSDAIKLFEIMKAKGPTPDVRSYTILIRY LCKQSRMEEAIDYFDEMVDSGCEPDVAVYACLISGFGNQRKMDMVFELLQEMKEKSCPPDAQTYNALIKLMVRRRLPDDAVKVYKKMIQNGMEPTIHSYD MIMRSYFYIRNYEMGRAVWDEMISRGCCPDDNSYTVFIRGLVSQGRSADACKYLEEMMEKGMKMPQLDYNKFVADISKAGTPAAFEALAQKMNFVGNFGT ASGLTRKSEAINNRINRHRRATERSSFRVLEEDEYSYYNPSGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	0	1
AT5G03110			unknown protein		Lus10026490 [exp]	1.0	0.9509
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	2.4	0.9313
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	3.0	0.9302
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	4.9	0.9268
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	5.0	0.9070
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	5.9	0.9042
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	6.0	0.9070
AT5G53750			CBS domain-containing protein ...		Lus10042702 [exp]	6.0	0.9016
AT5G03110			unknown protein		Lus10019920 [exp]	8.5	0.9026
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	8.9	0.9015

Compare expression of checked genes

Lus10003461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.