Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33020 62 / 2e-12 AtRLP24 receptor like protein 24 (.1) AT2G33030 61 / 2e-12 AtRLP25 receptor like protein 25 (.1) AT3G25010 60 / 2e-11 AtRLP41 receptor like protein 41 (.1) AT3G24982 58 / 8e-11 ATRLP40 receptor like protein 40 (.1) AT2G25440 57 / 1e-10 AtRLP20 receptor like protein 20 (.1) AT2G25470 57 / 1e-10 AtRLP21 receptor like protein 21 (.1) AT3G25020 57 / 2e-10 AtRLP42 receptor like protein 42 (.1) AT2G32680 55 / 1e-09 AtRLP23 receptor like protein 23 (.1) AT3G24900 52 / 8e-09 AtRLP39 receptor like protein 39 (.1) AT2G33060 52 / 1e-08 AtRLP27 receptor like protein 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011064 [exp] 206 / 5e-63 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10011039 [exp] 174 / 2e-51 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10014910 [exp] 120 / 2e-32 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10032335 [exp] 106 / 9e-28 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 100 / 2e-25 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10002214 [exp] 74 / 3e-16 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10014905 [exp] 73 / 5e-16 AT1G47890 240 / 4e-70 receptor like protein 7 (.1) Lus10003387 [exp] 71 / 3e-15 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10027580 [exp] 67 / 4e-14 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G026600 [exp] 71 / 3e-15 AT2G33060 345 / 4e-106 receptor like protein 27 (.1) Potri.012G025300 [exp] 71 / 3e-15 AT2G33060 357 / 9e-111 receptor like protein 27 (.1) Potri.012G009400 [exp] 70 / 4e-15 AT2G33060 414 / 3e-132 receptor like protein 27 (.1) Potri.011G054500 [exp] 68 / 3e-14 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.012G005600 [exp] 68 / 3e-14 AT1G45616 379 / 3e-115 receptor like protein 6 (.1) Potri.001G389100 [exp] 67 / 3e-14 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.012G019850 [exp] 67 / 4e-14 AT4G13810 309 / 2e-94 receptor like protein 47 (.1.2) Potri.012G028500 [exp] 67 / 5e-14 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.001G437800 [exp] 67 / 7e-14 AT2G32660 314 / 6e-99 receptor like protein 22 (.1) Potri.001G437600 [exp] 67 / 7e-14 AT2G32660 306 / 5e-96 receptor like protein 22 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003462 pacid=23182498 polypeptide=Lus10003462 locus=Lus10003462.g ID=Lus10003462.BGIv1.0 annot-version=v1.0 ATGTCAAAACTGCTGAACTTGTCACAAAATTCACTCACGGGTGAGATACCTCGAGGACGTCAATTTGAAACTTTCGAAGTAGAATCTTATCAAGGCAAAC CAGGATTGTGCGGCCTTCCATTGGCTAAACCATGCTACAATGTGAAGTCCCCACCTATAAGTAGCAAACCAGATGATGTTGATGCCAAAGGAGGGAATAG TGTGATCGACTGGGAGTACTATCGAGTTGGGATTGCATGTGGAGGCGGGACGGGGCACATTGCTGGATTTGTGGCGGCCTATTTTGTGTTTGGAAATTTC TTCGTCAAGAAACAAAGAGTTCGTCGTAATGTTGTTTGTCGTCTAAGGACCTGA
AA sequence Show only first row Show all	>Lus10003462 pacid=23182498 polypeptide=Lus10003462 locus=Lus10003462.g ID=Lus10003462.BGIv1.0 annot-version=v1.0 MSKLLNLSQNSLTGEIPRGRQFETFEVESYQGKPGLCGLPLAKPCYNVKSPPISSKPDDVDAKGGNSVIDWEYYRVGIACGGGTGHIAGFVAAYFVFGNF FVKKQRVRRNVVCRLRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33030		AtRLP25	receptor like protein 25 (.1)		Lus10003462 [exp]	0	1
					Lus10029656 [exp]	9.0	0.7888
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	9.7	0.7307
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012000 [exp]	11.8	0.6967
AT3G44800			Meprin and TRAF (MATH) homolog...		Lus10013547 [exp]	13.9	0.7793
AT5G45360			F-box family protein (.1)		Lus10007767 [exp]	17.5	0.7268
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10023967 [exp]	33.5	0.7249
AT5G19875			unknown protein		Lus10006311 [exp]	34.9	0.7264
AT4G18690			unknown protein		Lus10015276 [exp]	39.4	0.6992
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	43.2	0.7183
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	50.4	0.7006

Compare expression of checked genes

Lus10003462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.