Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45120 104 / 2e-25 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 93 / 1e-21 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 93 / 2e-21 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28200 85 / 1e-18 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G19580 80 / 9e-17 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G67450 79 / 1e-16 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT5G04390 79 / 3e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 77 / 1e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 74 / 2e-14 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G35280 72 / 3e-14 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015740 [exp] 454 / 2e-160 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 146 / 1e-39 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 139 / 7e-37 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10042872 [exp] 91 / 4e-20 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 88 / 8e-20 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 86 / 2e-18 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10024763 [exp] 85 / 7e-18 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 82 / 5e-17 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 79 / 1e-16 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143800 [exp] 107 / 7e-26 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 102 / 2e-24 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 88 / 2e-19 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 87 / 4e-19 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.014G066200 [exp] 86 / 3e-18 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 86 / 3e-18 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 81 / 3e-17 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 79 / 2e-16 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.002G119300 [exp] 77 / 6e-16 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.001G125900 [exp] 77 / 9e-16 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003463 pacid=23182481 polypeptide=Lus10003463 locus=Lus10003463.g ID=Lus10003463.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCTCATCATGATCACGAGGAAGAGGTGGTGATGAGGTGGAAACATGTGTGCAAATTCTGCAGGAAGAGGTTCCAAAGTGGGAGATCACTTG GAGGGCACATGAGGTCTCACATGGTGGATAATGTTTCAGCTCTTAATGATGGCACTCTCATCACCAGAAAGAAGCTCCCTTCTCTCCCCCACCTTACAGA AGCTGCAAAGTCTGCATCTTTATCAGTTGGAAGTAAGAATAACATCAACAATGGCGGAGGAGGAGGAGGATTATCATGTTCTGGGACATCAGTGAATGAA GATCAGCAAGAACAAGAGGAGGTTGCTATGTGCCTTATGCTGCTTTCCAGGGATATTGTTCATGTTACTGATGAGGATTATTCTGGCAAGAGTAGCTCTG ATTTCTTTGAACTTTCTGTTTCTGAGAATACAAGAAAGGGTGGTGATGGTTCCTCTAGTGATGGATTATCACAAGAGACTGAATCTGAAACTAGTAATAG TAAGAGTAGGAGGAAGTTTCAGTGTGAAGCTTGCAACAAGAGATTCCATTCATACCAAGCATTGGGAGGGCACAAAGCCAGCCACAAGAAGATCAAAGGA TGTTCTTCATTTAACAGCAATGAAGAAGAAGACACTCATGATAGAAGAAGCAAGCTGATCATGATGAAATCAATGAAGCATGAGATTCTTTCCAACAACA TCAAGGCCACTACTACTACTGTTGCTGCCACTAAGAAGAAAAAGAAGAAGAAGAGCAGTAGTGAGAGAGTGCATGAATGTCCAATTTGTTTCAAAGGGTT TACATCAGGACAGGCACTTGGTGGCCACAAGAGGTCTCATTTGCTTGTTGGAACTAGTGCTAGTGTTGCTGCACAAGAAGAAGAAGGAGAGGAAATTGCA GACATTAAGGATTTCATGGTGGATCTCAATCTTCCTGCTCAAGTGGATGAAGAAAGTATCATCCTCAGCAACAGCAACAGTAACAGTAACCTTAATGATG CTGTGTTTGAAAATCCATGGTGGACAGGAAGCAAGCATGAACAGCCCCTTGTGGCCTTTCATCTCTGA
AA sequence Show only first row Show all	>Lus10003463 pacid=23182481 polypeptide=Lus10003463 locus=Lus10003463.g ID=Lus10003463.BGIv1.0 annot-version=v1.0 MEEAHHDHEEEVVMRWKHVCKFCRKRFQSGRSLGGHMRSHMVDNVSALNDGTLITRKKLPSLPHLTEAAKSASLSVGSKNNINNGGGGGGLSCSGTSVNE DQQEQEEVAMCLMLLSRDIVHVTDEDYSGKSSSDFFELSVSENTRKGGDGSSSDGLSQETESETSNSKSRRKFQCEACNKRFHSYQALGGHKASHKKIKG CSSFNSNEEEDTHDRRSKLIMMKSMKHEILSNNIKATTTTVAATKKKKKKKSSSERVHECPICFKGFTSGQALGGHKRSHLLVGTSASVAAQEEEGEEIA DIKDFMVDLNLPAQVDEESIILSNSNSNSNLNDAVFENPWWTGSKHEQPLVAFHL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10003463 [exp]	0	1
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	8.2	0.9091
AT3G22970			Protein of unknown function (D...		Lus10024840 [exp]	9.5	0.9182
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	9.7	0.9331
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	15.6	0.9308
					Lus10011724 [exp]	17.0	0.9327
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	19.9	0.9159
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015740 [exp]	21.9	0.9106
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	22.8	0.9293
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	25.5	0.9204
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	28.7	0.9279

Compare expression of checked genes

Lus10003463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.