Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61200 184 / 2e-54 unknown protein AT5G07890 183 / 5e-54 myosin heavy chain-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048900 [exp] 245 / 5e-78 AT5G07890 298 / 4e-98 myosin heavy chain-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003464 pacid=23182485 polypeptide=Lus10003464 locus=Lus10003464.g ID=Lus10003464.BGIv1.0 annot-version=v1.0 ATGTCTGGACATTCCAGGAGTGACAGCGACAATTCTTTTGACGCCGACGAACTTTTGCAGATTCAGGCGAGGTGCCGGGAGCTCTGGAAAGAGAAGGACC TGTTGCTAGAATCACGTCCCCGGAGCTTTGAACTCATTCGGGAATTAGATTCACATGTGAAATCATTGAATGATAGTCGCAGTAAAGCCAAGAAACGGAT TGAAACGTTGGAAAAAGAGCTCTTGAATTGCTCTCAAGAGATAGATTACCTCCAAGATCAGCTCGGGTCAAGGACTGCCGAGTTGTTCAGTTTAGGGAAG CATGTTGATGAGCTTGAGTTGAAATTAACTAAGATGGAAGATATGGAAGTGAAGGTTGACCAGTTAAGTGATGAACTGAAGAGGTCTAATGCAGAGAATC TGCTTTTGATTGAAGAACTGCAAATCAAAGATGTGGAGCTACAATGTTCAGCATTGCACATAAGGAGACTAGAGGAGTCCGTTTGCTCCATAACCCTTGA TTCTCAGTGTGAAATTGAGGGCATGAAGCTTGACATGATGGCTCTGGAACAGGCTTGCTTTGAAGCTCGGAAAGCTCAAGAAGATACCATTCAAGAGAAT ACATCCTTAAATAAGCTAATCAAAGAACTGGAGGTTCAGATTAATGAAAAACCCGCTGTGGTTTTAGAAAGGGGAAATATAGAACTGAGGGAAAAGCCAA TGGAGTTGGTAGCAGAAGTAGATTCAAAGGAGCAACTGGAAAATAAAACCGACTATGAATCTGCGGTGAGAAAGCTTAAGGAAGAACTGAAAGAGGTGAA GTTAAGAGCGGAGGAAGAAGCCGAAGACATGGCACAAGAAATGGCCGAGCTGAGATATGAAACGACATGTTTACTTGAAGAAGAGCGCAAACGGCGCGCT ATGGTTGAGCTAGCATCTACACATAGAATAGCCGAATTAGAGTCGCAGGTAAATGATCAGAAATCTGTCGCACTTGCTGAATCAAAGATGGATGAACTCA ACTCTGAAGAATTCTATTTTCTTTTTGTTTCTATCAAGATTCGAAAAGATCGGAGAGAATCCGTTGCTGTTGTCAGACATCTCGAAGAAGCATAG
AA sequence Show only first row Show all	>Lus10003464 pacid=23182485 polypeptide=Lus10003464 locus=Lus10003464.g ID=Lus10003464.BGIv1.0 annot-version=v1.0 MSGHSRSDSDNSFDADELLQIQARCRELWKEKDLLLESRPRSFELIRELDSHVKSLNDSRSKAKKRIETLEKELLNCSQEIDYLQDQLGSRTAELFSLGK HVDELELKLTKMEDMEVKVDQLSDELKRSNAENLLLIEELQIKDVELQCSALHIRRLEESVCSITLDSQCEIEGMKLDMMALEQACFEARKAQEDTIQEN TSLNKLIKELEVQINEKPAVVLERGNIELREKPMELVAEVDSKEQLENKTDYESAVRKLKEELKEVKLRAEEEAEDMAQEMAELRYETTCLLEEERKRRA MVELASTHRIAELESQVNDQKSVALAESKMDELNSEEFYFLFVSIKIRKDRRESVAVVRHLEEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61200			unknown protein		Lus10003464 [exp]	0	1
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10032717 [exp]	4.5	0.9185
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	4.6	0.9340
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	7.2	0.9271
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	7.9	0.9089
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	12.7	0.9255
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	12.8	0.9271
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	14.0	0.9126
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	14.4	0.9232
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	15.6	0.9303
AT4G10970			unknown protein		Lus10023075 [exp]	18.3	0.9234

Compare expression of checked genes

Lus10003464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.