Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27270 664 / 0 EMB976 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74750 135 / 3e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 132 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT3G22470 130 / 5e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 129 / 3e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 126 / 6e-31 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 128 / 7e-31 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39980 125 / 3e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 125 / 4e-30 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 125 / 4e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015739 [exp] 670 / 0 AT5G27270 485 / 2e-161 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018318 [exp] 147 / 3e-37 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017134 [exp] 135 / 1e-33 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027916 [exp] 133 / 2e-32 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 129 / 1e-31 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10012068 [exp] 128 / 1e-30 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 127 / 2e-30 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 127 / 2e-30 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10012328 [exp] 127 / 2e-30 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049400 [exp] 734 / 0 AT5G27270 1179 / 0.0 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 141 / 2e-35 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G123600 [exp] 140 / 2e-35 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G034400 [exp] 137 / 2e-34 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 136 / 2e-33 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.015G105400 [exp] 135 / 5e-33 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 134 / 5e-33 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 134 / 5e-33 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 129 / 3e-32 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 131 / 4e-32 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003465 pacid=23182474 polypeptide=Lus10003465 locus=Lus10003465.g ID=Lus10003465.BGIv1.0 annot-version=v1.0 ATGGCGATTCACGTTTCCCTACTCTTCCTCAACTCCTCTCTTCTCCTTCTTCCCCACTCAAGTTCCGACTCCAAAACGCAGAGAAAACCTTCCTTCACCA CCACCAGATCCTTATCCACAACCATCAAAGCCTCAGTTCATCATGACCCCTGGTCCTTAAGCGACGGCAACATTTCAAAACCCGAGAACGACCACAAAAC CCCTCCCGCCGACGCCGTCGCACGCCGCATCATCAACGAAAGAGCTCGCCACTTGAGCCAGCTGCGTAGGAGCCAGGGCTCTCACGCACTGACTCCTCGA TGGATCAAGCGAACTCCTGAACAGATGGTTCAGTACCTCTCCGACGACCGCAGGGGCCATCTCTACGGAAAGAACGTCGCCGCCGCCATCAAAACCGTCA GGGGCCTCGCCGGAACGAGGGACGCCGATCGCGATGTCAGGTCTCTCATGGCCGGATTCGTCGGCAACCTCAGCTTCCAGGAGATGTGCGTCGTTCTCAA AGAGCAGAAAGGCTGGAGAGAAGTTCGTGATTTTTTCGCCTGGATGCAACTCCAGTTGAGCTATCGTCCGAGTGTTGTAGTCTACACTATCGTTCTGCGG ATATACGGGCAAGTAGGGAAAATCAAGCTGGCAGAGGAGACCTTTCTGGAAATGCTGGAGGCTGGATGTGAGCCAGATGAAGTTGCTTGCGGCACAATGT TGTGTTCGTACGCCAGATGGGGGAACCACAAGGCGATGTTCTCGTTCTACGAGGTGCTCGAAGGTCGAGGGATTAGGCTCCCCATTACTGTTTACAACTT CATGCTGTCCTCATTGCAGAAGAAGTCTCTTCATGAGAGTGTCATTCATCTCTGGAAGGATATGGTTAGTCAGTGTGTGCTTCCTACTGCTTTCACATTT ACCCTTGTTATTAGCTCGCTAGTTAAGGATGGCCATCATGAGGAAGCATTCGCAAGTTTCGTCGAAATGAAGAATCAGGGGCATTTGCCTGACGAAGCTA CTTACAGCTTGCTTATTAGTGCAAGCACTAGAAAAGGCAATTGGGATGAAGCTTTGGAATTATATGACGACATGAGGTCTAGTGGGCACTTTCCCAGTAA CTTCACATGTGCATCACTCCTGACATTATATTACAAAACTTCGGATTATTCCAAGGCCCTGTCCCTCTTGTCCGAGATGCAAAGAAGGAGAATTGATCCG GATGAAGTTATTTACGGTTTGCTGATAAGAATCTACGGCAAACTCGGTCGCTACGAGGATGCCATGAAGACGTTTCGAGAAATGGAGCAACGAGGTTTGC TGAGCAGCGAGAAAACGTACTTGGGTATGGCACAAGTGCATCTTAGTTTCCGACATACCGAGAGAGCTCTGAGCATTGTGGAAGAGATGAAGTCGAGGAA CATTTGGGTATCCAGGTTTGGTTATATTGTCCTGTTGCAGTGTTATGTTAGGAAAGGGGATGTGGATGCTGCGGAGGATACGTTTCAAGCTTTATCGATG ACTGGATTACCCGATGCCCATTCTTGTAACGACATGTTGAATCTCTACACAAGACTTGGCTTCACTCAAAAGGCTAGAGATTTTGTTATTCGTCTGAGGA AAGATCAGGTTGTGTTTGATGAGGAGATGACCCAAAAAGTCCGTAGATTGTTTGGTGAGATGGATGTGCCGAATGATGCTAAACAACTTGATGGAGGAGA TCAAAGGGGTAAGAAGATAGGATATATTTAA
AA sequence Show only first row Show all	>Lus10003465 pacid=23182474 polypeptide=Lus10003465 locus=Lus10003465.g ID=Lus10003465.BGIv1.0 annot-version=v1.0 MAIHVSLLFLNSSLLLLPHSSSDSKTQRKPSFTTTRSLSTTIKASVHHDPWSLSDGNISKPENDHKTPPADAVARRIINERARHLSQLRRSQGSHALTPR WIKRTPEQMVQYLSDDRRGHLYGKNVAAAIKTVRGLAGTRDADRDVRSLMAGFVGNLSFQEMCVVLKEQKGWREVRDFFAWMQLQLSYRPSVVVYTIVLR IYGQVGKIKLAEETFLEMLEAGCEPDEVACGTMLCSYARWGNHKAMFSFYEVLEGRGIRLPITVYNFMLSSLQKKSLHESVIHLWKDMVSQCVLPTAFTF TLVISSLVKDGHHEEAFASFVEMKNQGHLPDEATYSLLISASTRKGNWDEALELYDDMRSSGHFPSNFTCASLLTLYYKTSDYSKALSLLSEMQRRRIDP DEVIYGLLIRIYGKLGRYEDAMKTFREMEQRGLLSSEKTYLGMAQVHLSFRHTERALSIVEEMKSRNIWVSRFGYIVLLQCYVRKGDVDAAEDTFQALSM TGLPDAHSCNDMLNLYTRLGFTQKARDFVIRLRKDQVVFDEEMTQKVRRLFGEMDVPNDAKQLDGGDQRGKKIGYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	1.7	0.9376
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	1.7	0.9159
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10032522 [exp]	2.0	0.9087
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	4.2	0.9334
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	5.5	0.9038
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	7.1	0.8767
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	7.7	0.8789
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	8.1	0.8601
AT5G40640			unknown protein		Lus10014575 [exp]	8.5	0.8760
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	8.7	0.8687

Compare expression of checked genes

Lus10003465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.