Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61210 346 / 9e-120 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT1G13890 265 / 2e-88 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) AT5G07880 231 / 3e-75 ATSNAP29, SNAP29 ARABIDOPSIS THALIANA SYNAPTOSOMAL-ASSOCIATED PROTEIN SNAP25-LIKE 29, synaptosomal-associated protein SNAP25-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015738 [exp] 548 / 0 AT5G61210 381 / 1e-133 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10034705 [exp] 452 / 2e-161 AT5G61210 350 / 1e-121 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10004660 [exp] 262 / 3e-87 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10036893 [exp] 259 / 9e-86 AT1G13890 335 / 2e-116 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10037092 [exp] 258 / 2e-85 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10026653 [exp] 185 / 4e-58 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049000 [exp] 395 / 5e-139 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.012G066700 [exp] 346 / 1e-119 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.008G093800 [exp] 281 / 1e-94 AT1G13890 337 / 4e-117 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.010G160350 [exp] 241 / 1e-78 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10003466 pacid=23182473 polypeptide=Lus10003466 locus=Lus10003466.g ID=Lus10003466.BGIv1.0 annot-version=v1.0 ATGTTTGGCTTGACAAAATCTCCCTTAAGGATTCCTAAGCATAACAAGGTTGACCAGCAACGTGCGGCTCCTTCAAACAGCAACCCGTTTGATTCTGATG ATGAGTTGCCTAGTAAGGAAACCACCATGAAACTCTCCAAGAGATCTTCTTCAGAGCCAGACCTAACTACACCGGGCTCTTCCACCAATCCATTTGATGA TTTTGAGGACAAGGGAGCAGCATCTTCATCATCCTCTTCGTCGCATTCCCGCGTTTCGAGTGCAAGGAACAAGTATAAGAATGATTTCCGGGACTCGGGA GGAATTGAGAACCAATCAGTGCAGGAGTTGGAGGACTATGCTGTTTATAAGGCTGAGGAGACCACAAAGGCAGTCAATGGTTGTCTCAAGATTGCTGAGG ATATCAGAGAAGATGCTTCCAAAACTCTAATCACCTTGCATCACCAGGGCGAGCAAATTACCAGGTCGCACAATGTCGCTGTTGAGCTGGACAATGATCT TTCTCGGGGTGAAAGACTTTTAGGATCTCTTGGTGGGATGTTCTCCAAAACTTGGAAACCAAAGAAGACTCGTCCAGTCGCCGGCCCTGTGATCACCAAA GATGATGCTCAAAGGAGAGGTAACCATCTACAGCAAAGGGAAAAGTTGGGTCTGAATACTGCATCCAAGGGGGTGTCTACTAACGCACGAACACTCCCTA CAGAACCAACTGATGCATACCAGAAAGTAGAGGTCGAGAAGGCCAAGCAAGATGATGCCTTTTCGGATCTGAGTGACCTGTTAGGAGAGCTGAAGGATAT GGCTACGGATATGGGAACTGAAATAGACAAGCAAACCAAGGCTCTAGATCATTACCAGGATGATGTGGACGTGCTAGATATCCGTGTGAGAGGAGCCAAT CAACGCACTCGACGTTTGTTAGGAAAGTAG
AA sequence Show only first row Show all	>Lus10003466 pacid=23182473 polypeptide=Lus10003466 locus=Lus10003466.g ID=Lus10003466.BGIv1.0 annot-version=v1.0 MFGLTKSPLRIPKHNKVDQQRAAPSNSNPFDSDDELPSKETTMKLSKRSSSEPDLTTPGSSTNPFDDFEDKGAASSSSSSSHSRVSSARNKYKNDFRDSG GIENQSVQELEDYAVYKAEETTKAVNGCLKIAEDIREDASKTLITLHHQGEQITRSHNVAVELDNDLSRGERLLGSLGGMFSKTWKPKKTRPVAGPVITK DDAQRRGNHLQQREKLGLNTASKGVSTNARTLPTEPTDAYQKVEVEKAKQDDAFSDLSDLLGELKDMATDMGTEIDKQTKALDHYQDDVDVLDIRVRGAN QRTRRLLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	0	1
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	1.4	0.9583
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	2.0	0.9370
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10037273 [exp]	2.8	0.9104
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	2.8	0.9567
AT4G33780			unknown protein		Lus10035665 [exp]	3.5	0.9004
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	3.5	0.9438
AT2G30630			P-loop containing nucleoside t...		Lus10041167 [exp]	4.1	0.8930
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Lus10037436 [exp]	4.9	0.9135
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	6.2	0.8974
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	8.1	0.9237

Compare expression of checked genes

Lus10003466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.