Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07830 637 / 0 ATGUS2 glucuronidase 2 (.1) AT5G61250 622 / 0 ATGUS1 glucuronidase 1 (.1.2) AT5G34940 446 / 5e-152 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015737 [exp] 987 / 0 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 778 / 0 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 746 / 0 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 494 / 2e-170 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10036963 [exp] 482 / 2e-166 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10038109 [exp] 480 / 2e-165 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10037110 [exp] 476 / 3e-164 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 474 / 2e-163 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10008038 [exp] 474 / 5e-163 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049100 [exp] 697 / 0 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.010G160800 [exp] 534 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.018G121500 [exp] 478 / 2e-164 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 476 / 1e-163 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 469 / 1e-160 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003468 pacid=23182482 polypeptide=Lus10003468 locus=Lus10003468.g ID=Lus10003468.BGIv1.0 annot-version=v1.0 ATGGGATTACGATTTTCCTCGTTCGTCCTTTTGGCCTTTCTCCGCGTGATTGTAGCTCAAGAGATCATACCAGCCACAGTTGCAGTAGATGGGGCTGCCG CAGTTGCTGAGACTGATGACAACTACGTGTGTGCTACATTGGATTGGTGGCCTCATGACAAGTGTGATTACCACCATTGCCCTTGGGGTAATACCTCCGT CGAAAATCTGGATTTGTCACATCCTCTTCTTGCCAAAGCTATCCAAGCTTTCAAGTCATTGAGAATAAGAATTGGAGGCTCTTTGCAAGACCAAGTAGTG TATGATGTGGGGAACCTTGGTTCCCCTTGCCAATCTTTCTTCAAAAAGAAAGGCGGTTTGTTCGATTTTTCCAAGGGGTGTTTGCACATGGACCGATGGG ATGCACTCAACAACTTGTTCAACACTACCGGAGCCATAGTCACATTCGGCTTAAACGCTCTCCGAGGGAGGCACAAGATCAAGGGTAGGCTTTGGGGAGG ACCTTGGAATTCAACTAATGCTTATGATTTCATCAGTTACACCATCTCAAAGGGGTACAAGATATATGCATGGGAATATGGTAACGAGTTGAGCGGAACT GGTGTAGGTGCAAGTGTCACTGCTGATACATATGCAAAAGATGTGATCAAACTGAAAAAGATTGTTGACGAATTATATACAAACTCGAGTGCGAGACCTT CAATCATGGCACCTGGAGGTTTTTATGATAAGGATTGGTATGGCAAGCTTCTTAAGATCACAGGTCCTGGAAGATTGGATATTGTGACTCACCATATATA CAACCTTGGTGCAGGTGTTGATCCCCATCTAATCCATAATATTCTGGATCCAAGTATCTTGAACACGGCGTTAGATACATTCCGTGATCTTTCGCAGACA TTGCAACGGAACGGTCCCTGGGCATCAGCATGGGTTGGAGAGGCTGGCGGTGCATATAACAGCGGTGGATTTCATGTATCTGATACATTTGTGAACAGCT TTTGGTACTTGGATCAGCTTGGCATGGCAGCTACATACAATACCAAGGTGTACTGCAGGCAGACCTTAATCGGTGGACACTATAGTTTGCTCAACACTAC AACATTCGTTCCGAATCCTGATTACTACAGTGCCCTTCTCTGGCATCGACTGATGGGGAAAAGTGTTCTAGGTGTCACCAGTACCGCTTCGCGTTATCTA CGCCATTATGCTCATTGCTCCAAGGGAAGAGAAGGCATCACCTTGCTGCTTATAAACCTGAGCAACAACACGGACTACGAAGTCGACATAAGAAGCAGCT CCGAGTCGGAGCTGACTCTGCAAGAAAGCGTTGGCAGATCGAATTCCTTTGCGAACAGGCTCAAGCGGTCGATTCTGTGGATAGGGAGTGAAGCTTCGGA CGAGTCGTTGTTGAGAGAAGAGTACCATCTGAGTCCCAAAGATGGGAACCTTCAAAGCCAAGAAATGGTCCTAAATGGTGTACCAGTACAACTTACAGAG AAGGGAGACGTGCCGAAGCTCGAACCTCTCCGTTCGAGATTGAGTTCCCGATTGTTTGTCGGCTCCTTGTCAATTTCATTCGTAGTACTGCCTAATTTCG ATGCTCCTGCTTGTGCGTAA
AA sequence Show only first row Show all	>Lus10003468 pacid=23182482 polypeptide=Lus10003468 locus=Lus10003468.g ID=Lus10003468.BGIv1.0 annot-version=v1.0 MGLRFSSFVLLAFLRVIVAQEIIPATVAVDGAAAVAETDDNYVCATLDWWPHDKCDYHHCPWGNTSVENLDLSHPLLAKAIQAFKSLRIRIGGSLQDQVV YDVGNLGSPCQSFFKKKGGLFDFSKGCLHMDRWDALNNLFNTTGAIVTFGLNALRGRHKIKGRLWGGPWNSTNAYDFISYTISKGYKIYAWEYGNELSGT GVGASVTADTYAKDVIKLKKIVDELYTNSSARPSIMAPGGFYDKDWYGKLLKITGPGRLDIVTHHIYNLGAGVDPHLIHNILDPSILNTALDTFRDLSQT LQRNGPWASAWVGEAGGAYNSGGFHVSDTFVNSFWYLDQLGMAATYNTKVYCRQTLIGGHYSLLNTTTFVPNPDYYSALLWHRLMGKSVLGVTSTASRYL RHYAHCSKGREGITLLLINLSNNTDYEVDIRSSSESELTLQESVGRSNSFANRLKRSILWIGSEASDESLLREEYHLSPKDGNLQSQEMVLNGVPVQLTE KGDVPKLEPLRSRLSSRLFVGSLSISFVVLPNFDAPACA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	1.0	0.9908
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	2.0	0.9719
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10028212 [exp]	2.0	0.9513
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	3.5	0.9501
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	5.1	0.9454
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	5.7	0.9532
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	8.5	0.9455
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	11.0	0.9462
AT4G03230			S-locus lectin protein kinase ...		Lus10031603 [exp]	11.0	0.9278
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	12.6	0.9505

Compare expression of checked genes

Lus10003468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.