Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07810 1142 / 0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) AT1G48310 244 / 1e-68 CHR18, CHA18 chromatin remodeling factor18 (.1) AT3G54280 115 / 1e-25 RGD3, ATBTAF1, CHR16, CHA16 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) AT3G06400 115 / 1e-25 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 115 / 1e-25 CHR17 chromatin remodeling factor17 (.1.2) AT2G13370 105 / 1e-22 CHR5 chromatin remodeling 5 (.1) AT2G28290 104 / 3e-22 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G06010 103 / 4e-22 ATCHR12 Homeotic gene regulator (.1) AT4G31900 101 / 2e-21 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G25170 101 / 3e-21 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015736 [exp] 584 / 0 AT5G07810 281 / 9e-84 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Lus10006642 [exp] 233 / 2e-64 AT1G48310 834 / 0.0 chromatin remodeling factor18 (.1) Lus10039409 [exp] 226 / 1e-61 AT1G48310 778 / 0.0 chromatin remodeling factor18 (.1) Lus10033967 [exp] 121 / 2e-27 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10013625 [exp] 114 / 5e-25 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Lus10005339 [exp] 101 / 3e-21 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10034064 [exp] 100 / 8e-21 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10022423 [exp] 99 / 2e-20 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10012798 [exp] 99 / 2e-20 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067000 [exp] 1309 / 0 AT5G07810 1185 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Potri.010G003300 [exp] 253 / 2e-71 AT1G48310 932 / 0.0 chromatin remodeling factor18 (.1) Potri.010G021400 [exp] 120 / 2e-27 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 114 / 2e-25 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G195900 [exp] 105 / 1e-22 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G123400 [exp] 105 / 1e-22 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 104 / 3e-22 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.006G262200 [exp] 103 / 4e-22 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.010G019150 [exp] 103 / 5e-22 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G086500 [exp] 102 / 1e-21 AT2G46020 2483 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0263 [flax] [poplar] His-Me_finger PF01844 [flax] [poplar] HNH HNH endonuclease CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003469 pacid=23182471 polypeptide=Lus10003469 locus=Lus10003469.g ID=Lus10003469.BGIv1.0 annot-version=v1.0 ATGGTAGCCACTGAAGAGCAGAGGCGGAGGGCAGAAGCTAATCGGTTGGCAGCTCTAGCAAAGCGAAAAGCACTTTCGGTATCCCAAGCCGATCAGCATC AGCAGGATCCATGGAGGCTCTTCAAATGCCGAAAGATATCATCCCCGGACATCAATCCACCCCCCAACTACCCCAATTCCGTGGCTGTTGACCCAATTTC GGGTACCCATTTGGCGGAGAAGTTCAGGGTCGTGCTCGAGATTTGCTCACCTGACTCGTTCTTGGTCAGACCGGAAGCAGTTAAAGGGTTCTTGTATCCT GGGGAGGAAGAGTGTTTTAGGACGTTAAGTCAATGCTTGTCCAATGTAATGGCGTCGCATTATACCCAAAATAACGGAGGTGAAGGGGCCTGCGTCTATA AGCTTAGAGATTATGATGCAGTTCTTTCGTGCTTGAAGTTCCTAAAGGGAATTGAAATAGAGAAGATACCTTTTGGAACGCTTCATATTATGCAAAAGCT CGGGCGTCACATTGATACTCGAAAGTGGGAGCCATGCCGACCTGAACATTTGACTGATGAAGCAGTCGATGAGGCTATTGCGAAACTACCAAAGAAACTA TTGGATGTACTGTTACCTTTCCAAGTTGATGGTTTGAGATTCGGTGTGCGAAGGGGTGGCCGTTGTCTAATTGCTGACGAAATGGGACTGGGGAAAACGC TACAGGCAATCGCAATTGCTGGGTGTTTCATGCATGAAGGTCCTATACTCGTTGTTTGCCCTGCTGTCCTAAGATATTCCTGGGCAGAAGAGTTGGAGCG GTGGCTTCCATCTTGTTTACCCTCTGAAATTCACCTTGTCTTTGGCCATCAAAACAATCCTGCACACCTAGAGAAGAACCCTAGAGTTGTGGTCATCTCC TTCAAAATGCTTCATCACCTGAAACGGACCATGCTTGAAAGAGAATGGGCTATAATGATAATTGATGAGTCCCATCATCTCCGCTGCACCAAGAAGAAAG AGTCACTAGAGATTGAAGCTGCTATGGCCATGGCAGAAAAAGTCAAGCGCATAGTTCTTTTGTCTGGCACGCCTTCATTGTCCAGACCATATGACATTTT CCATCAGATAAACATTTTATGGCCTGGCTTACTAGGACAAAACAAGTATGATTTTGCGAAGACTTACTGTGCAGTCAAATTTGTCCACACTGCCGATGGA AAAGGATTCCAGGATTTCTCAAAAGGTGTTCGCTTGGAAGAGCTGAATGTCTTACTGCAGCAAACTGTCATGATAAGACGTTTGAAGCAGCACTTGTTGG CCCAGTTGCCACCAAAACGCAGACAAATTATAAGCCTGCAGCTAAAGAACTCTGATATTCTTCAGGCAAAGGCTGCTCTTGGGGTGGAGAATAGTGAATC AGACGGAGCTAGCAGAAAGGGTTCAAAGTCAAATGAACTCTCACTTCAAGAGCTCGGTGTCGCAAAACTTCCTGGATTTCGTGAATGGCTTTCAATTCAT CCTCTCATATCAGAGGCAGATGGCATGACACAATTGGATGCTAACCTTAGTTGTCAAAAAATGATCATTTTCGCCCATCACCTTAAAGTTCTCGATGGAG TGCAAGATTTCTTGTTTGAGAAGAAGGTTGGATTTGTCCGTATTGATGGTTCAACACTTCCCAGGGATAGGCAATTAGCTGTCTTGTCATTCAAATCATC TGATGAGGTTAAGGTTGCAATCATTGGTATAAAAGCAGGAGGTGTTGGACTTGACTTTTCTGCAGCGCATAATGTTGTGTTTCTGGAGGTTCCTCAGTGC CCTTCTCTGATGGCACAGGCCGAGGACAGAGCTCATAGGCGTGGTCAAACAAAAGCAGTGAACGTATATATCTTCTGTGCAAAGGATACTGAGGATGAAA GGATTTGGCAGAAGTTAAACAGGAGTCTGCGTCATGTTTCATCCACGACAAATGGGAAATATGATGCTGTACCAGAGATAACGGTGGATGGTATTTCTTA TTTTAAAACATCCAGTACAGCGGATGAAAGTCTTGGAGGTCAAGGTTCAGCGAAGGCCTTAGCTAGTCAGCTCTCTGGAACTGAACTTACAGCATCTCCT AGGTCTGGCTCAGCTGTGGATACACACACAGTTGAAACACAACCTGAAACATTGGAAGGTCTATCTGATAGATTTATGGAACACTGCGATTTTCTTGGCA GCATGATTCCAGATTATGATTTTCGTTGTGAGAACAGTACGGTTCTTGATCAAGAAATGGGAGAAGATTCAATCCCAAGTGAAAATTTAGAAACCAGTCA CTGTAAACCCGAAACTAGGAGTCAGAGCACAGCCTGTTCTCCTGACTTGAATGAGCAGAGTGTATTGAAGGATCAGCTGATGATGGGAACAGAGAGTTGT TCTCAAAGACCAGTGCCCGATGATGACACTTCTATTCAGCAAAATGGAAGCGGCAGTTGTGACTCTAACAAGATACGCTATTTACGTTTTGAGGTAAGTC AATACACTGGAAGGGTTCACCTTTATTCCTGCAGACCTGGTATAGACTCTAGACCTCAGCCCCTGTTTGAAAGCTTCAGACCGGAAGAACTTGAGCCACT TGAGCCTCCTACCCCACGTGACAAAGAAGCATATTCCGAATCCTTGGAGGGTAAACCAGATTATAGACAAGCTGTTCGTGTATTCATTGACGAGTGGAAT AAGCTGCGGCCCATTGAGCGGAGGAAATTATTTGGCAAAACCTTACAGCTTCCTCTTGCAGTTGAATTGTGCTACTTGAATGAGACTTTGAACCATAACT CAATGGGACTGCTGAAAGGTCAAAGCAAACGTCGGAAGACTCCAATTTTGGAAATTAGCCATCCTTTGCCATCTGATGCTTCTTGGAAAGTTGTATATTT GTCTAGAGGCCGTGTTAAAAAGGAGAGAAAGTACACTCAGGGTTGGACGCCATCAGAGGAGCCGCTCTGCAAACTTTGTCAATCACCTTGCAAGGGTGAC AATGCTAGGACACCAGAATATTTCGAGGATCTATTCTGCAAACTTAGTTGCTACGAAGAATATCAAATTAGAACTAGTAGCAGATCTCTCCGGCAGGAAC TTTTTCAAATAGAGCATGGGGTGTGCACAAATTGCAAGTTAGACTGCCATCAACTGGTGAAGGCTATAAAACCATTATCATTGGGCAACAGAAAAGAGTA TGTGAAGAAAGTAGCACCAAAGGTTGCTGCTCGCAAAAAATTGTTTGAGAAGCTTGTGAACTATCCAGCTGAAGGAAATGCATGGCATGCAGACCACATA GTTCCTGTCTATAATGGTGGAGGTGAGTGCAGACTAGAGAACATGAGGACTCTCTGTGTGGCTTGCCACTACGATGTAACAGCTGCTCAAGGTGCGGACA GACGTTTGGCTAGAGCAAGGGCTCGGAAGCAGCTTAAAGCGGCCATGTTTGAGCTTGAACAGGACCAGAATTCGGAGAAGTTTGACAGAAGTTCCAAGAT CCCAAATGATTCATTGAGTGACAAAGTGCATATGAATTCACAGAAGCAAGAACATCAAGAGGAGGATGAGGTGCTCTTTGTAAAGGTACCTGGAAGCGCC TACTCAGCGAGCACAGAAACAATCCTCGTAAGCCACGACAATGATGATGACAAGCCGCCATCCAATGCCGAAAAATCAATTCAAAACGGAGCATCTGCCT CGGATACAATTCAGTGTCCTGCATCAACAGAGTAA
AA sequence Show only first row Show all	>Lus10003469 pacid=23182471 polypeptide=Lus10003469 locus=Lus10003469.g ID=Lus10003469.BGIv1.0 annot-version=v1.0 MVATEEQRRRAEANRLAALAKRKALSVSQADQHQQDPWRLFKCRKISSPDINPPPNYPNSVAVDPISGTHLAEKFRVVLEICSPDSFLVRPEAVKGFLYP GEEECFRTLSQCLSNVMASHYTQNNGGEGACVYKLRDYDAVLSCLKFLKGIEIEKIPFGTLHIMQKLGRHIDTRKWEPCRPEHLTDEAVDEAIAKLPKKL LDVLLPFQVDGLRFGVRRGGRCLIADEMGLGKTLQAIAIAGCFMHEGPILVVCPAVLRYSWAEELERWLPSCLPSEIHLVFGHQNNPAHLEKNPRVVVIS FKMLHHLKRTMLEREWAIMIIDESHHLRCTKKKESLEIEAAMAMAEKVKRIVLLSGTPSLSRPYDIFHQINILWPGLLGQNKYDFAKTYCAVKFVHTADG KGFQDFSKGVRLEELNVLLQQTVMIRRLKQHLLAQLPPKRRQIISLQLKNSDILQAKAALGVENSESDGASRKGSKSNELSLQELGVAKLPGFREWLSIH PLISEADGMTQLDANLSCQKMIIFAHHLKVLDGVQDFLFEKKVGFVRIDGSTLPRDRQLAVLSFKSSDEVKVAIIGIKAGGVGLDFSAAHNVVFLEVPQC PSLMAQAEDRAHRRGQTKAVNVYIFCAKDTEDERIWQKLNRSLRHVSSTTNGKYDAVPEITVDGISYFKTSSTADESLGGQGSAKALASQLSGTELTASP RSGSAVDTHTVETQPETLEGLSDRFMEHCDFLGSMIPDYDFRCENSTVLDQEMGEDSIPSENLETSHCKPETRSQSTACSPDLNEQSVLKDQLMMGTESC SQRPVPDDDTSIQQNGSGSCDSNKIRYLRFEVSQYTGRVHLYSCRPGIDSRPQPLFESFRPEELEPLEPPTPRDKEAYSESLEGKPDYRQAVRVFIDEWN KLRPIERRKLFGKTLQLPLAVELCYLNETLNHNSMGLLKGQSKRRKTPILEISHPLPSDASWKVVYLSRGRVKKERKYTQGWTPSEEPLCKLCQSPCKGD NARTPEYFEDLFCKLSCYEEYQIRTSSRSLRQELFQIEHGVCTNCKLDCHQLVKAIKPLSLGNRKEYVKKVAPKVAARKKLFEKLVNYPAEGNAWHADHI VPVYNGGGECRLENMRTLCVACHYDVTAAQGADRRLARARARKQLKAAMFELEQDQNSEKFDRSSKIPNDSLSDKVHMNSQKQEHQEEDEVLFVKVPGSA YSASTETILVSHDNDDDKPPSNAEKSIQNGASASDTIQCPASTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07810			SNF2 domain-containing protein...		Lus10003469 [exp]	0	1
AT1G61000			unknown protein		Lus10012690 [exp]	8.2	0.8203
AT1G42440			unknown protein		Lus10013232 [exp]	9.9	0.8242
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	10.1	0.8180
AT4G33800			unknown protein		Lus10033772 [exp]	12.7	0.7447
AT1G09290			unknown protein		Lus10023158 [exp]	12.8	0.7446
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	18.5	0.8145
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	21.0	0.8087
AT4G39380			unknown protein		Lus10033530 [exp]	25.5	0.7821
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	28.4	0.7896
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	30.6	0.7648

Compare expression of checked genes

Lus10003469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.