Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47210 631 / 0 MYB myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015735 [exp] 786 / 0 AT2G47210 528 / 0.0 myb-like transcription factor family protein (.1) Lus10021650 [exp] 699 / 0 AT2G47210 552 / 0.0 myb-like transcription factor family protein (.1) Lus10034713 [exp] 122 / 2e-33 AT2G47210 86 / 9e-21 myb-like transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117400 [exp] 716 / 0 AT2G47210 617 / 0.0 myb-like transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003470 pacid=23182496 polypeptide=Lus10003470 locus=Lus10003470.g ID=Lus10003470.BGIv1.0 annot-version=v1.0 ATGGACGCCAAGGACATCCTTGGATTGCCCAAGACGCCGCTCTCAGTACACCCAGAGAAGAAGTCCCAGCCCAAGAAAGATTCCCAGCGAAAACCCGATG GCATTTCCCGCGAGGTGTATGCTCTTACGGGAGGGCTAGCACCTTTAATGCCGTCAATTGATTCGTCCTTCTTGAAGAAACCTCCGCCTTCTGACGAAAA GATCACTTGGCAATGGCTTCCTTTCACTAGTTCTGCCCGGAAGGATTCTCTGCAGCTTTATCATTGGACCAGAGTTGTGAATGGTGTTCCTCCAACAGGG GACTATTCCTTTGCCAAATATAATAAGTCTGCTGAGGTTATCAAATACACGGAGGAGGAATATGAGCAGCATTTGACCGATCCTACATGGACCAAGCAAG AGACAGATCAACTGTTTGACTTGTGTGAGCAATTTTCTCTCCGCTTTGTCATCATAGCAGACAGGTTCCCATCTTCTCGGACTGTAGAGGAATTGAAGGA TCGGTATTATAGTGTTTCTAGGTCCATATTGCTTGCTAGAGCTACATCTCCAGCTGATGTCTCAGGCCACCCGCTTGTTAAGGAAACCTATAATGCCTCC CAAGATAGAGACCGCAAGCGTGCTTTGTCCATGGTCCTTTCACAAACTAGGCAGCAAGAGAGAAAGGATACTGAGGTCGTTGCTGAAGCGAAAAGGATAA CTGAATCTCGGATGGCTGCAAGAGGTGCTGAGCCATCTGTAATGCCTGTCGTGGACACCGAAATGGCTGAGGCCACTGTTAACCACAATGATGGTATTGT GCCTCCACCCAATGTTCGACTTACCCCTGTTACAGATGCACCTTCAACTTTAGTCATTGCAGACACCTCTTCTACTCTTGCCTCACTGCGCATGCTTCCT GTATACTTGAGGACTTATGGACTTGAGCAAATGGTGCAACAAGCCAGTTCCATAGCAGGACTTCGTACTATTAAGCGAGTTGAACAAACTTTGCAAGATC TTGGGATTAATTTAAAGCCTAGGGTGCCAACAAAGGCTGTCTGTGCTGAGCACCTTGAATTGAGAAAGGAAATACTGACCTTTCTAAACCTTCAAAAACA GTTGCAATACAAGGAGGCAGAAGGTTCTTCGTTTCGTGAGGGTACCTATTCTGAAATGCCAGGCACACCAAAGTATGCAGTTCGTGACCATGATCGTGCC TTCATTACTGATGCTCTGGCTTTTGGAGGTGAAAGGGGTGGTAGAAAGGATCAGAAACGCAAGGGTCCTGGAAGGGCATCTGACACACCATCATCACCAG CTAATAAGCGTCCAAGAAAAATGAAGGCTTCTGATCTCTAA
AA sequence Show only first row Show all	>Lus10003470 pacid=23182496 polypeptide=Lus10003470 locus=Lus10003470.g ID=Lus10003470.BGIv1.0 annot-version=v1.0 MDAKDILGLPKTPLSVHPEKKSQPKKDSQRKPDGISREVYALTGGLAPLMPSIDSSFLKKPPPSDEKITWQWLPFTSSARKDSLQLYHWTRVVNGVPPTG DYSFAKYNKSAEVIKYTEEEYEQHLTDPTWTKQETDQLFDLCEQFSLRFVIIADRFPSSRTVEELKDRYYSVSRSILLARATSPADVSGHPLVKETYNAS QDRDRKRALSMVLSQTRQQERKDTEVVAEAKRITESRMAARGAEPSVMPVVDTEMAEATVNHNDGIVPPPNVRLTPVTDAPSTLVIADTSSTLASLRMLP VYLRTYGLEQMVQQASSIAGLRTIKRVEQTLQDLGINLKPRVPTKAVCAEHLELRKEILTFLNLQKQLQYKEAEGSSFREGTYSEMPGTPKYAVRDHDRA FITDALAFGGERGGRKDQKRKGPGRASDTPSSPANKRPRKMKASDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47210	MYB		myb-like transcription factor ...		Lus10003470 [exp]	0	1
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	3.9	0.7836
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	8.8	0.7790
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	9.6	0.7429
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	15.7	0.7303
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	15.9	0.6944
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	23.9	0.6998
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	26.2	0.7009
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	26.2	0.7084
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	28.7	0.7078
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	29.1	0.7417

Compare expression of checked genes

Lus10003470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.