Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00050 108 / 2e-26 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20180 103 / 2e-24 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT1G09530 99 / 1e-22 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G36930 94 / 4e-21 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 86 / 2e-19 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G24260 87 / 8e-19 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 84 / 4e-18 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G46970 84 / 1e-17 bHLH PIL1, bHLH124 phytochrome interacting factor 3-like 1 (.1) AT5G58010 82 / 2e-17 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G28790 81 / 1e-16 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015734 [exp] 469 / 5e-166 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000208 [exp] 242 / 2e-79 AT4G00050 50 / 2e-07 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028175 [exp] 110 / 2e-26 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 100 / 8e-24 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022833 [exp] 103 / 9e-24 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 102 / 2e-23 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10029805 [exp] 96 / 2e-21 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 95 / 6e-21 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10041592 [exp] 84 / 1e-18 AT4G36930 106 / 3e-28 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066500 [exp] 108 / 7e-26 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G143300 [exp] 107 / 2e-25 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G252800 [exp] 100 / 4e-23 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.014G111400 [exp] 99 / 2e-22 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.013G001300 [exp] 99 / 2e-22 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 99 / 3e-22 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G124400 [exp] 93 / 3e-21 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G055400 [exp] 95 / 4e-21 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G139700 [exp] 94 / 4e-21 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025800 [exp] 91 / 2e-20 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003471 pacid=23182497 polypeptide=Lus10003471 locus=Lus10003471.g ID=Lus10003471.BGIv1.0 annot-version=v1.0 ATGAACAATAACAGGTCGTGGATTAATTACGAAGTAGCAGAGCTAACATGGGAAAAGGGACAACCGTCATCCAATGGCCTCGGGAGCAGCCTAAGCCCAA AACAAACATGGGCCAGCACTAGGCCCAATAACGACACTCTCGAATCCATTGTCCACCAAGCTGCTTCCCTTAAGCCGCCGACGTCGCCGCCGTCAAATCC AACCTCCGACTCCAAATGGCGGCCCGTGGCCGCCTCCTCCCTGAAACGCAGCAGGACAGAGTCAACCGTTGCAAACGACGGCAAAAGAATCTGGGATTCC AATCGAAGTAATGATGTCGAAAATGCTGCTAGTTACAGAGACGGGAACGGCGGGGCAGGACGCTCCGCCACTTCCAGCAGGGGCAGTGGCGGTACGGTGA TGACGTGGCCACTTCCGGCCACGTATCAGACTAAACCTGATGATTTTGATGATAAAGAAACAACAACTAGTACAAGATCACTCTCGTCGATATTCAGCAA GAGAAGCAGAGCAAGTGACGTGCACAATCAATCTGAAAGGAGACGTAGAGACAGGATCAACCAGAAGATGAAAGCACTCCAGAAGTTGGTTCCTAATGCA AACAAGACGGATAAAGCTTCGATGTTGGACGAGGTGATTGATTACTTGAGGCAACTGCGAGCACAAGTTGAAATGATGAACAATATCAGAAGCATGAAAC CTCCACCACAACCACAAATGGTGATGATGGTCCCCAACATTGATCAAATGCCTCTCTTTGCTGGTTTAGGAATGGGAATGAATCCATTAGCATCATCATC ATCGTCGTCATCGATTCACATGCGTCATCTTCTACCTCCATCGGCATTCATGGCTAATACCAGTCCTCCATTTCTTCTTCATCACTCTGCTACAAACATG AACTACAACAATACTTGTAAGAGCAGTGGAGAAGCTAATTTGTCATCATTGAATGCAGCACAGTCTTCCATGGATGTAGAGCTTTACTTGAAGAACATGG CTGCAATGTATCAACAGCAGCAGCAACAAGTCCATAATAGTCGCGCAAATGCGATCGGAGCTGCAACTCACCACTCCAGCCATACTGTTCAAAGGGACAA GTAA
AA sequence Show only first row Show all	>Lus10003471 pacid=23182497 polypeptide=Lus10003471 locus=Lus10003471.g ID=Lus10003471.BGIv1.0 annot-version=v1.0 MNNNRSWINYEVAELTWEKGQPSSNGLGSSLSPKQTWASTRPNNDTLESIVHQAASLKPPTSPPSNPTSDSKWRPVAASSLKRSRTESTVANDGKRIWDS NRSNDVENAASYRDGNGGAGRSATSSRGSGGTVMTWPLPATYQTKPDDFDDKETTTSTRSLSSIFSKRSRASDVHNQSERRRRDRINQKMKALQKLVPNA NKTDKASMLDEVIDYLRQLRAQVEMMNNIRSMKPPPQPQMVMMVPNIDQMPLFAGLGMGMNPLASSSSSSSIHMRHLLPPSAFMANTSPPFLLHHSATNM NYNNTCKSSGEANLSSLNAAQSSMDVELYLKNMAAMYQQQQQQVHNSRANAIGAATHHSSHTVQRDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	0	1
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	1.0	0.9698
AT3G18060			transducin family protein / WD...		Lus10032444 [exp]	2.4	0.9443
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	4.2	0.9618
					Lus10002317 [exp]	5.7	0.9509
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	6.0	0.9223
AT4G25800			Calmodulin-binding protein (.1...		Lus10020686 [exp]	6.7	0.9141
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10000208 [exp]	7.2	0.9472
AT5G43870			Plant protein of unknown funct...		Lus10021903 [exp]	7.4	0.8633
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	9.5	0.9463
					Lus10025317 [exp]	10.3	0.8313

Compare expression of checked genes

Lus10003471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.