Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29270 258 / 3e-86 RING/U-box superfamily protein (.1.2) AT1G69330 232 / 6e-76 RING/U-box superfamily protein (.1) AT1G74370 228 / 2e-74 RING/U-box superfamily protein (.1) AT1G21651 52 / 3e-07 zinc ion binding (.1) AT1G21650 52 / 4e-07 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT5G13530 47 / 1e-05 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015732 [exp] 431 / 2e-154 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10030699 [exp] 262 / 9e-88 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2) Lus10005220 [exp] 262 / 2e-87 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2) Lus10004666 [exp] 205 / 3e-65 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1) Lus10026648 [exp] 207 / 3e-63 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1) Lus10028560 [exp] 53 / 2e-07 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10018865 [exp] 41 / 0.0008 AT1G21650 573 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10024135 [exp] 40 / 0.0008 AT5G13530 309 / 2e-96 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090000 [exp] 298 / 8e-102 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2) Potri.012G067200 [exp] 290 / 1e-98 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2) Potri.004G125400 [exp] 272 / 9e-92 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2) Potri.010G161100 [exp] 220 / 2e-71 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1) Potri.019G066500 [exp] 49 / 1e-06 AT1G21651 716 / 0.0 zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003473 pacid=23182489 polypeptide=Lus10003473 locus=Lus10003473.g ID=Lus10003473.BGIv1.0 annot-version=v1.0 ATGTGGGGATTTGCTTCGAAAGCTGTTAGTAGATCCCGCAGCGGGTCAAATAAGAGTAGTAGAAACCCACGTCGAGCTGCATCATCGGATGATGAACCTT CTCTAAACAGCAGCAGAGAGGAGGGCTTGGAATGCCCAATTTGCTGGGAGTCTTTCAACGTTGTCGAGAATGTGCCTTATGTTCTATGGTGCGGTCACAC CCTTTGTAAGAACTGCATCCAAGGACTTCAACGAGCCGTCGTGAAACTTCCTACCCTACCGGTACAGGTTCCTTTCTTCATCACCTGTCCCTGGTGTAAT CTTCTCTCCTTGAGGTTGGTTTACAAGGGGAACATGAGGTTCCCAAGCAAGAACTACATTTTGCTCTGGATGGTTGAGAGCATCAATGGTGATAGGTCAA AGTCAAGTTCTTCCATCCGTGGGAATAATAATCACCAGTCTGTTTGGTCTTCAAATAGAAATACTGACATGGGTAGTAGTCATCAGCTTAGCCAACATAG AAGAAATAACAGAAACGGCCGATCTTCTTCCCGATCGGTTGAAGAGCCGATCTTGGATGGTCCTCCACCGCCAGGTGTTATCTATGCTAATGTTCAGAGG CTCCATGGATCAATCCGTAAGTCGTTGGTGTTCTTTCTCCAGTTGACGGCTAAGTTTCCATTGATTGTGTTGTTTCTTCTCATTGTGTTGTATGCAATAC CAGCCAGTGCAGCTGTGCTGGCGCTTTACATACTGATCACAGTTTTGTTTGCTCTTCCTTCTGCACTCATCCTATACTTTGCCTTCCCAAGTCTGGATTG GCTAGTTAGAGAAATCATCACTTGA
AA sequence Show only first row Show all	>Lus10003473 pacid=23182489 polypeptide=Lus10003473 locus=Lus10003473.g ID=Lus10003473.BGIv1.0 annot-version=v1.0 MWGFASKAVSRSRSGSNKSSRNPRRAASSDDEPSLNSSREEGLECPICWESFNVVENVPYVLWCGHTLCKNCIQGLQRAVVKLPTLPVQVPFFITCPWCN LLSLRLVYKGNMRFPSKNYILLWMVESINGDRSKSSSSIRGNNNHQSVWSSNRNTDMGSSHQLSQHRRNNRNGRSSSRSVEEPILDGPPPPGVIYANVQR LHGSIRKSLVFFLQLTAKFPLIVLFLLIVLYAIPASAAVLALYILITVLFALPSALILYFAFPSLDWLVREIIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29270			RING/U-box superfamily protein...		Lus10003473 [exp]	0	1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10037551 [exp]	1.4	0.8766
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	3.2	0.8708
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	5.2	0.8561
AT5G07670			RNI-like superfamily protein (...		Lus10027217 [exp]	5.9	0.8524
AT3G03560			unknown protein		Lus10005694 [exp]	7.5	0.8465
					Lus10031452 [exp]	8.8	0.8478
AT5G67390			unknown protein		Lus10011080 [exp]	9.8	0.8354
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	10.4	0.8398
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	13.7	0.8364
					Lus10018814 [exp]	15.6	0.8143

Compare expression of checked genes

Lus10003473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.