Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07800 599 / 0 Flavin-binding monooxygenase family protein (.1) AT5G61290 589 / 0 Flavin-binding monooxygenase family protein (.1) AT1G62620 386 / 1e-130 Flavin-binding monooxygenase family protein (.1) AT1G63370 385 / 7e-130 Flavin-binding monooxygenase family protein (.1) AT1G12200 356 / 2e-118 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G62560 350 / 5e-116 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G62600 342 / 3e-113 Flavin-binding monooxygenase family protein (.1) AT1G12160 333 / 2e-109 Flavin-binding monooxygenase family protein (.1) AT1G65860 332 / 4e-109 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G12140 327 / 4e-107 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015731 [exp] 862 / 0 AT5G07800 621 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024598 [exp] 353 / 3e-117 AT1G62620 587 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024609 [exp] 268 / 6e-85 AT1G62560 444 / 1e-154 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) Lus10032247 [exp] 206 / 1e-62 AT1G12140 315 / 1e-105 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) Lus10023940 [exp] 83 / 1e-16 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10005178 [exp] 76 / 3e-14 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 72 / 3e-13 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10032235 [exp] 66 / 4e-13 AT1G62600 117 / 2e-32 Flavin-binding monooxygenase family protein (.1) Lus10020001 [exp] 67 / 2e-11 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067500 [exp] 652 / 0 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121100 [exp] 384 / 1e-129 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121000 [exp] 357 / 4e-119 AT1G12200 557 / 0.0 flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) Potri.013G019900 [exp] 348 / 2e-115 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.006G137600 [exp] 76 / 2e-14 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 73 / 1e-13 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 73 / 1e-13 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 71 / 8e-13 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 60 / 3e-09 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.002G254200 [exp] 59 / 4e-09 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10003474 pacid=23182486 polypeptide=Lus10003474 locus=Lus10003474.g ID=Lus10003474.BGIv1.0 annot-version=v1.0 ATGGACCACCAACCCTCCTCTGACAAGCCTACCCTGTCGAGAAAGGCGGTATGTGTGATCGGGGCAGGACCGTCAGGGCTGGTAGCGGCTAGGGAGCTGA GGAAGGAAGGGCATAGGGTGGTGGTGTTTGAGCAAAAGCATGATGTTGGTGGGCAATGGTTGTATGATCCAAACATAGAGAGGGAAGATCCATTGGGGAA TACAAAGTTCTTGGATGTTCATAGTAGCATCTACACTTCGCTCAGGCTTCTGTCCCCGAGGGAGATCATGGGCTACACCGATTTCCCTTTCTTCGTGAAG GAAGGGAGGGACACTAGGAGGTTCCCTGGCCATAAGGAGCTATGGCTTTACCTCAAGGATTTTAGTGCCCATTTTGGCTTGAGGGAGATGGTTAGGTTCA ACACTAGGGTTGAGTATGTGGGGATGTTGGATTATCACGGGGAGTTTGGGAAAGAGATTAAATGGGTTGTCAAGAGTAGATCATTGCTCAAGACGGGTAG CAGTAGTAGTATCGAAAGTAGTGATCACGGAGAACTTGAAGCTAGTGTCGACGAGAATGTGATTAGAGTTGATCACAGTAATTCACTTGTGCAGGAGGTT TACGATGCAGTGGTCGTAGCTAATGGTCATTATTCGTATCCTCGGTTGCCATCTATAAAAGGAATGGAGAAGTGGAAGAGGAAGCAAATGCACAGCCATG TTTACAGGGTCCCTGAGGCATTCAAGGACCATGTGGTAGTGGTGGTGGGGAATTCTCTGAGTGGACAAGACATAGCAATGGAGCTGGTAGGTGGAGTTGC AAAACACGTTTATATAAGTGCTAGATCCCAAAACAATCTTACCGAGGGCTTCTCTAAAGTTATTTCGAAACACGACAACCTTCACCTTCGACCCCAGATT GAGTCCCTTGAAGAAGATGGGAAGGTTCTGTTCGTGAACGGATCTTGGGTGATTGCCGATGCCATCTTATACTGCACAGGGTATACGTATTCATTCCCGT TTCTTGACAGCAAAGGAATAGTAAGTGTGGATGATAACAGAGTGGGTCCTCTGTATCACCATACTTTCCCTCCTTCACTTTCACCTTCCCTCTCCTTTGT CGGCATCCCCAGAAAGGCAACCTTCCCTTTCTTTGAGTGGCAAGGGAAATGGATCGCCCAAGTTCTGAGTGGCAAGAGGAAATTGCCTTGCTATGAGGAC ATGATGGACTCTGTTCATCAATTTTATCGCCAGAGGGAAGTTGATGGTGTTCCCAAGCACGATACCCATGACATTATCCAGTTCGAGTATTGTGATAAGT ATGCAGATCATGTCGATTGTCCGCATCTAGAAGAGTGGAGGAAGAAGTTATGCGTTTTAGCATTGGAGAAGTCTTATGCAAACTTGGAGACATATAAGGA CTCGTGGGATGATGAAGAACTCCTTGAAGAAGCTCTTCAGAGCCCTCATTTCACTCAGCCACTTGATCAACCTACTACTACTACTACTACTACTTTCACT TGA
AA sequence Show only first row Show all	>Lus10003474 pacid=23182486 polypeptide=Lus10003474 locus=Lus10003474.g ID=Lus10003474.BGIv1.0 annot-version=v1.0 MDHQPSSDKPTLSRKAVCVIGAGPSGLVAARELRKEGHRVVVFEQKHDVGGQWLYDPNIEREDPLGNTKFLDVHSSIYTSLRLLSPREIMGYTDFPFFVK EGRDTRRFPGHKELWLYLKDFSAHFGLREMVRFNTRVEYVGMLDYHGEFGKEIKWVVKSRSLLKTGSSSSIESSDHGELEASVDENVIRVDHSNSLVQEV YDAVVVANGHYSYPRLPSIKGMEKWKRKQMHSHVYRVPEAFKDHVVVVVGNSLSGQDIAMELVGGVAKHVYISARSQNNLTEGFSKVISKHDNLHLRPQI ESLEEDGKVLFVNGSWVIADAILYCTGYTYSFPFLDSKGIVSVDDNRVGPLYHHTFPPSLSPSLSFVGIPRKATFPFFEWQGKWIAQVLSGKRKLPCYED MMDSVHQFYRQREVDGVPKHDTHDIIQFEYCDKYADHVDCPHLEEWRKKLCVLALEKSYANLETYKDSWDDEELLEEALQSPHFTQPLDQPTTTTTTTFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07800			Flavin-binding monooxygenase f...		Lus10003474 [exp]	0	1
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	2.2	0.8410
AT1G06980			unknown protein		Lus10038171 [exp]	3.5	0.8189
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10019890 [exp]	4.6	0.8142
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	6.7	0.7451
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	7.7	0.8099
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	7.9	0.7683
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	11.3	0.7542
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	11.7	0.7772
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	14.1	0.7195
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10005705 [exp]	18.0	0.7867

Compare expression of checked genes

Lus10003474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.