Plant FIBer expression Database

Lus10003475 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25400 134 / 2e-41 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015730
[exp]
190 / 2e-63 AT3G25400 157 / 1e-50 unknown protein
Lus10020407
[exp]
136 / 4e-42 AT3G25400 178 / 1e-58 unknown protein
Lus10009588
[exp]
133 / 1e-40 AT3G25400 177 / 5e-58 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G168700
[exp]
146 / 1e-46 AT3G25400 170 / 9e-56 unknown protein
Potri.010G069700
[exp]
146 / 2e-46 AT3G25400 166 / 4e-54 unknown protein
Potri.014G148200
[exp]
140 / 8e-44 AT3G25400 175 / 2e-57 unknown protein
Potri.002G235000
[exp]
137 / 2e-42 AT3G25400 134 / 5e-41 unknown protein
Potri.002G250000
[exp]
135 / 3e-42 AT3G25400 151 / 3e-48 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0231 MazG PF03819 MazG MazG nucleotide pyrophosphohydrolase domain
Representative CDS sequence
>Lus10003475 pacid=23182500 polypeptide=Lus10003475 locus=Lus10003475.g ID=Lus10003475.BGIv1.0 annot-version=v1.0
ATGGAGTATGAAAAACAGCAGAAGGATGTTTCACTCCAAGAACTGAGGAACAAGGTAGCAGAGTTTGCTGAAGCAAGAGGCTGGAATGAGTACCACAGTC
CAAGAAACCTCCTTTTGGCCCTGGTGGGAGAAGTTGGGGAGCTGTCAGAGATATTCCAGTGGAAAGGGGAAGTAGGGAAAGGGCTTCCAAATTGGAGCTC
AGATGACAAGGAGCACTTGGGGGAAGAGCTTTCTGATGTTCTGCTGTACCTTATCCGCCTTGCTGATGTTTGTGGACTTGATCTTGGCACTGCTGCTCTC
ACCAAGATTGTCAAAAATGCTATCAAGTACCCGATCATCCCCAAAATCACGAAACAGTACCCGACACCTTCATCGACTTCATCCTCGTCCTCCTAG
AA sequence
>Lus10003475 pacid=23182500 polypeptide=Lus10003475 locus=Lus10003475.g ID=Lus10003475.BGIv1.0 annot-version=v1.0
MEYEKQQKDVSLQELRNKVAEFAEARGWNEYHSPRNLLLALVGEVGELSEIFQWKGEVGKGLPNWSSDDKEHLGEELSDVLLYLIRLADVCGLDLGTAAL
TKIVKNAIKYPIIPKITKQYPTPSSTSSSSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G25400 unknown protein Lus10003475
[exp]
0 1
AT5G24310 ABIL3 ABL interactor-like protein 3 ... Lus10023052
[exp]
3.5 0.7099
Lus10026168
[exp]
4.4 0.7463
AT2G39840 TOPP4 type one serine/threonine prot... Lus10021872
[exp]
21.8 0.7184
AT3G52720 CAH1, ATACA1, A... A. THALIANA ALPHA CARBONIC ANH... Lus10017033
[exp]
31.2 0.6761
AT2G26600 Glycosyl hydrolase superfamily... Lus10038099
[exp]
31.3 0.6863
AT3G24110 Calcium-binding EF-hand family... Lus10016675
[exp]
33.9 0.6902
AT5G54860 Major facilitator superfamily ... Lus10017090
[exp]
34.9 0.6625
AT4G16444 unknown protein Lus10035992
[exp]
56.3 0.6574
AT1G54870 NAD(P)-binding Rossmann-fold s... Lus10034047
[exp]
56.9 0.6538
AT5G04270 DHHC-type zinc finger family p... Lus10037973
[exp]
57.4 0.6207

Lus10003475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.