Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015729 [exp] 448 / 7e-150 AT1G74360 539 / 2e-173 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF12171 [flax] [poplar] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10003476 pacid=23182475 polypeptide=Lus10003476 locus=Lus10003476.g ID=Lus10003476.BGIv1.0 annot-version=v1.0 ATGGGGGATAATATGTTTGGAGAAGGAACAATACCAGTCCATATAGCCATCCAGAGAGAGATGGTGTACAGAAGGAAACTTGCGCGGATGCAGCAGATAC CTGAAGCTGAGTTTTGCAAGAATCTCAGGCCTTTTGTGGTTGAACCCCCAATGCAAGGTCCAAGCCTTGGTTCACATCAAAGGCCAAGTTCAAATGCAAC TCCACCATTACCAAAACTGCAAGGACCAAACCATGGCCTCAAATCATCTCACCCTTTGATTTCAGCTTCCAGCCTTCGTCCCTGTCCTAACCGAAGTTCA GATGTGAATCTCGAGCTCGAGATTCCATCAAGGCAACAGCAAGGTCCAAACAACCAGTTCGAGACATCACAGCCAGATGTAGGACTTGGAGAAGTTCAAA ACCACAATGACTACACTTTCTGCAAGATCTGTCAGGTTCCCTGTGCAGGTTATGCCAACTTCGTGCAACACATGGAAGGTAAAAAGCACAAGAACAAACA ACTGGAGAAGAACGCAGGGCAGATTCCAGATTCTGGTATGAGAGAGAGTCCGCGAAGATGGTGCGGAATGTGCAAGATCTGGTGCATGAATGAGGAGTTA TTCCAACTCCATCTGGGAGGTAAGCCACACTTGCTGAAGTTGGCAGCCGAGAATAGGAGCAAGCAGGTTGTAGTACATGATGAACTGGGGAAGGTGAGCC ATGGAGGAGGTGGTAGCACAGGGAATCAACAGGGACCACATAGGTGCGATCTCTGCGATATATGGTGCACAGATAGGGGGTCATTGGAGCTGCACAAAAA GGGGAAACGACACTTCGCTCAACTCCATGAAAGCCAGAACAAGAAGGCAAGGTTCTGA
AA sequence Show only first row Show all	>Lus10003476 pacid=23182475 polypeptide=Lus10003476 locus=Lus10003476.g ID=Lus10003476.BGIv1.0 annot-version=v1.0 MGDNMFGEGTIPVHIAIQREMVYRRKLARMQQIPEAEFCKNLRPFVVEPPMQGPSLGSHQRPSSNATPPLPKLQGPNHGLKSSHPLISASSLRPCPNRSS DVNLELEIPSRQQQGPNNQFETSQPDVGLGEVQNHNDYTFCKICQVPCAGYANFVQHMEGKKHKNKQLEKNAGQIPDSGMRESPRRWCGMCKIWCMNEEL FQLHLGGKPHLLKLAAENRSKQVVVHDELGKVSHGGGGSTGNQQGPHRCDLCDIWCTDRGSLELHKKGKRHFAQLHESQNKKARF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Lus10003476 [exp]	0	1
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10002526 [exp]	1.7	0.9388
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10005524 [exp]	5.0	0.9531
AT2G15220			Plant basic secretory protein ...		Lus10013869 [exp]	6.3	0.9441
AT1G23000			Heavy metal transport/detoxifi...		Lus10032445 [exp]	8.5	0.9322
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	10.5	0.9236
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	13.4	0.9375
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10020663 [exp]	13.7	0.9240
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	14.3	0.9014
AT1G32730			unknown protein		Lus10001085 [exp]	15.3	0.8369
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	15.7	0.9121

Compare expression of checked genes

Lus10003476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.