Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74360 777 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53890 272 / 3e-77 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT5G63930 272 / 6e-77 Leucine-rich repeat protein kinase family protein (.1) AT2G01950 242 / 2e-66 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G75820 237 / 2e-65 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 239 / 3e-65 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07180 236 / 8e-65 ERL2 ERECTA-like 2 (.1) AT5G62230 236 / 9e-65 ERL1 ERECTA-like 1 (.1.2) AT3G24240 230 / 2e-62 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G13380 222 / 8e-60 BRL3 BRI1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015729 [exp] 902 / 0 AT1G74360 539 / 2e-173 Leucine-rich repeat protein kinase family protein (.1) Lus10038726 [exp] 294 / 3e-84 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10031689 [exp] 241 / 3e-66 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10039030 [exp] 241 / 4e-66 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10031108 [exp] 240 / 5e-66 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10019525 [exp] 236 / 1e-64 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011585 [exp] 229 / 9e-63 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10020835 [exp] 229 / 5e-62 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 225 / 4e-61 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061600 [exp] 1072 / 0 AT1G74360 1375 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G067600 [exp] 723 / 0 AT1G74360 1014 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007600 [exp] 276 / 1e-78 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.015G132200 [exp] 264 / 2e-74 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 259 / 1e-72 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.001G073600 [exp] 253 / 1e-70 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 238 / 2e-65 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 229 / 4e-62 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G065400 [exp] 228 / 7e-62 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 226 / 3e-61 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003478 pacid=23182493 polypeptide=Lus10003478 locus=Lus10003478.g ID=Lus10003478.BGIv1.0 annot-version=v1.0 ATGCCAGAAGAAGAAGCTGATTCTTCCCCTGCCATTGTGTTCCTCTTCTCAATCATCCTCCTTCAAGTGAGTCTAGTCGCCGGAGATTCTCTGGAAGCCG ACAGAGATTCGCTTCTGAGCTTGAAATCCCATCTGATTAACCGGAACAGAGTTAATCCGGGGAGGTACTTGCAATGGGATCAACGCATCACTCCAAACCC TTGCAACTGGCTGGGAATTTCCTGCTCTTCAGACGGGTCAAGAGTAACCGGAATCAGCCTCGCCGACGACAACATCTCCGGGGAGGTGTACGGGAATTTC TCATCGCTGACAGCTCTGGAGTCTCTTGATCTCTCTCGAAATTCGCTTCTCGGTTCTCTGCCTGCTGATCTGAGCAACTGTCAGAGTCTGGCTTATGTGA ATCTTTCTCACAATATCCTACAAGGAGGAGTGAACTTCACCGGGTTGAGAAATTTGCAGGTTGTTGACTTGGCCAAGAACAGATTCTCCGGCAGAATTCA GTTCAATTCTCCTGGAATGTGTGGGAAACTGGTTGTGGCCAATCTGTCAGAGAATTCTTTCGCTGGCAGGGTTGATCATAGCTTTGTTGGGTGCTCCAAC TTGCAGTATCTTGACTTGAGCTCGAACCACTTCATTGGCGGGTTGTGGAGTGGATTCTCTAAGCTTAAGGAGTTCTCCGCCTCTGAAAATGCTTTGAATG AACTTTCCGGATCCGTGTTCAACAAGAATTGCAGCCTGCTATCATTAGACATATCAGAGAACAATTTCACTGGTGTGTTGCCTGGAAACGTCTCGAATTG CAAGGATCTCACCAATCTGAATGTCGGAGGGAATCATTTCAGTGGCTTGATTCCGTCGGAGATAGGCGCGATTTCGGGTCTCGATACGTTGTTTCTTGGT AACAATAGCTTCTCTTCTGCTATACCAGAAACTCTACTGAACTTGAACAACTTAACCCTTCTGGATTTGAGCAGAAACAATTTCGGTGGCGGAATACAAC CGATTTTCGGGAGGTTCACTCGAGCAAAGTTTCTGGTTTTGAGTGGCAATTCATACACAAGTGGACTGCATAGTTCAGGAATTCTGAACCTCACCGATCT CGTCGGACTAGACTTGAGCTATAATAACTTCTCAACTTCGTTGCCGGTCGAGTTGTCACGAATGCGAGGGTTGAAATTCCTGATCATGGCACATAATCAG TTCAACGGAAGCATACCTGAAGAATATGGGAAAAACTTGACAGACATTCAAGCTCTTGATCTATCCTACAACAGACTCACAGGAAGCATCCCATCCTCTT TCGGAGATCTGAATTCCCTCCTATGGCTGATGCTGGCAAACAACGAGATAGCCGGTCCGATTCCAAGCGAACTCGGGAAATGCAGCAGCTTACTGTGGCT GAACTTAGCTAACAACAGACTATCAGGAACCATTCCATCAGAACTGATGAACATTGGGAGCAATCCCGAGCCGACGTTTCGAAAGAATCGTGAACATGGC AGGGCTTATACTGGTGTCGGAGAGTGCACGGGGATGAAGAGATGGATCCCTGCTGATTATAATCCGTTCAGATTCGTATATTCGATCCTCAACACCAAGA GCTGCAAAAGCTTATGGGACAGATTGTTCAACGGGAATGGAATCTTCCCGGTTTGTGCACATGGGACTACAGTTAGAACGTTCGAGATCTCGGGATATCT CCAGCTTAGTGGTAACATGTTATCAGGTCACGTCCCTGTAGAAATCGGCAAGATGGAGAATTTCAGCATGCTGCATTTGGGAATCAATAACTTAACGGGG AACTTACCTCTCCAGGTTCAACAGATGCCTCTAGTGGTTCTCAACTTGACAAGAAACTCATTCCAAGGAATCATTCCCAGTCAGATAGGTAACATAAAAT GCTTGCAGAATCTGGACTTCTCCTTCAATAATTTCTCAGGAACATTCCCTACCAGTGTAAATAACTTGACCGAGCTGAGCAAGTTCAATATGTCGTACAA TCCATCGATTTCGGGGATCATCCCGACGACTGGCCAGTTGGCAACCTTCGAAAGGGACTCGTTTCTTGGCGACCCGCTGCTTGTTCTCCCCAAATTCATC AGCAATTCGTCTGATCGAGGATCAAGGGATGGCGAATCGGGCAAGGATAAGACTGTTGTTCACTCGAAATGGGGAGCATTCTTGATATTGACAGTTCTGG TTTTGGCAATTCTGGTATGCGGAGGTCTGTCCTTGATCATCCATGTATTGGGGAAAACCCCACAGGATTCATATCTACTGCAAGAGAGTAACAAATTCGG ACTCGATTCTGCGACAACTTCCGGCAGTAGCTCGTCCGATACAGTGAAGATAATCCGTCTGGACAAAACGGCGTTCACTCACGCTGACATTCTATCCGCG ACGGAGAATTTCTCCGAGAGGAGGATCGTCGGGAGGGGAGGGTTTGGGACGGTTTACAGAGGAGTATTACCTAATGGAAGACAAGTGGCGGTGAAGAAGC TTCTGAGGGAAGGGATCGAAGGCGAGAAGGAGTTCCGAGCGGAGATGGAAGTTCTTACCGGGAACGGCGGGCATCCGAATCTGGTGGCCCTCCACGGCTG GTGCCTCGACGGATGCCAGAGGATCTTGGTGTACGAGTTCATGGAAGGAGGCGCGCTGGAGGATCTGGTGTCGGATTGGGGGAGGCTGACGTGGCGCCGG AGGGCGGAGATCGCGGTGGATGTGGCGAGTTCGGGGACGTGGGCGGGAGCCACGTAA
AA sequence Show only first row Show all	>Lus10003478 pacid=23182493 polypeptide=Lus10003478 locus=Lus10003478.g ID=Lus10003478.BGIv1.0 annot-version=v1.0 MPEEEADSSPAIVFLFSIILLQVSLVAGDSLEADRDSLLSLKSHLINRNRVNPGRYLQWDQRITPNPCNWLGISCSSDGSRVTGISLADDNISGEVYGNF SSLTALESLDLSRNSLLGSLPADLSNCQSLAYVNLSHNILQGGVNFTGLRNLQVVDLAKNRFSGRIQFNSPGMCGKLVVANLSENSFAGRVDHSFVGCSN LQYLDLSSNHFIGGLWSGFSKLKEFSASENALNELSGSVFNKNCSLLSLDISENNFTGVLPGNVSNCKDLTNLNVGGNHFSGLIPSEIGAISGLDTLFLG NNSFSSAIPETLLNLNNLTLLDLSRNNFGGGIQPIFGRFTRAKFLVLSGNSYTSGLHSSGILNLTDLVGLDLSYNNFSTSLPVELSRMRGLKFLIMAHNQ FNGSIPEEYGKNLTDIQALDLSYNRLTGSIPSSFGDLNSLLWLMLANNEIAGPIPSELGKCSSLLWLNLANNRLSGTIPSELMNIGSNPEPTFRKNREHG RAYTGVGECTGMKRWIPADYNPFRFVYSILNTKSCKSLWDRLFNGNGIFPVCAHGTTVRTFEISGYLQLSGNMLSGHVPVEIGKMENFSMLHLGINNLTG NLPLQVQQMPLVVLNLTRNSFQGIIPSQIGNIKCLQNLDFSFNNFSGTFPTSVNNLTELSKFNMSYNPSISGIIPTTGQLATFERDSFLGDPLLVLPKFI SNSSDRGSRDGESGKDKTVVHSKWGAFLILTVLVLAILVCGGLSLIIHVLGKTPQDSYLLQESNKFGLDSATTSGSSSSDTVKIIRLDKTAFTHADILSA TENFSERRIVGRGGFGTVYRGVLPNGRQVAVKKLLREGIEGEKEFRAEMEVLTGNGGHPNLVALHGWCLDGCQRILVYEFMEGGALEDLVSDWGRLTWRR RAEIAVDVASSGTWAGAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74360			Leucine-rich repeat protein ki...		Lus10003478 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10019635 [exp]	19.3	0.9196
AT3G50910			unknown protein		Lus10028325 [exp]	19.5	0.9199
AT2G36430			Plant protein of unknown funct...		Lus10035568 [exp]	22.9	0.9184
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	23.3	0.8720
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10023607 [exp]	24.7	0.8889
AT1G80450			VQ motif-containing protein (....		Lus10042423 [exp]	28.2	0.9170
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	34.5	0.8996
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	35.6	0.8752
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10001701 [exp]	39.7	0.8896
AT1G74360			Leucine-rich repeat protein ki...		Lus10015729 [exp]	42.7	0.9155

Compare expression of checked genes

Lus10003478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.