Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034724 [exp] 91 / 4e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003479 pacid=23182470 polypeptide=Lus10003479 locus=Lus10003479.g ID=Lus10003479.BGIv1.0 annot-version=v1.0 ATGGGGGAGATTGATACCAAATCTATGGAATCAGTTAAGGTTGCCGTCTCTCTTTTCGAAATAGCAACCTTAAAAGGAGGGATTAGATCATCAACTGGAC CCTTAAAAACGCTATCAAGTTACAAGGACCAACTCAAGGCAAAAGACTCCGAGCGTCTGGAACTCCTCCACAAACTAGACCACTACCACAACACCGTGGA CCACCTCACCTCCACGCTACAACAATCGCGATCAATCGATCAGGGCGAGCTGCTCAGCATTCAGACTGAGCTCCTCGCCCTGAAGGACGAGAACCGGGAG GCCCTAGAAAGGGCGGATTCAGAGAGAGGGAGGGCCGAGGAGATGGAGAAGCAACTAAAGGATGCACGAGCCGAGGTGGGGAAGGTGAAGGGAGAATTGG AAAGTGCCAAGCGTAAAGTCGGAGAGCTGAGGGGGAGGGCGGAGCAGGCAGCGACGAGGGCTGATGCTGCCGAGATGGAGCTGAGGAAGTTGAGGGAGAG GAAGGAGAAGAGGAAGGCGGCTATTGCTGCTCTAAGGGAGGAATCATTGATGTCGTCTGGGAAGTTGATGGTGATGATGGGGTATAGTAATCCTGAATCA CCTGATGGCTCATATCAGCAGCCATTGGGGAAGTTTCTGAATCTCAATTATTAG
AA sequence Show only first row Show all	>Lus10003479 pacid=23182470 polypeptide=Lus10003479 locus=Lus10003479.g ID=Lus10003479.BGIv1.0 annot-version=v1.0 MGEIDTKSMESVKVAVSLFEIATLKGGIRSSTGPLKTLSSYKDQLKAKDSERLELLHKLDHYHNTVDHLTSTLQQSRSIDQGELLSIQTELLALKDENRE ALERADSERGRAEEMEKQLKDARAEVGKVKGELESAKRKVGELRGRAEQAATRADAAEMELRKLRERKEKRKAAIAALREESLMSSGKLMVMMGYSNPES PDGSYQQPLGKFLNLNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003479 [exp]	0	1
					Lus10024012 [exp]	2.0	0.8756
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10015633 [exp]	4.0	0.8861
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	4.9	0.8276
					Lus10019512 [exp]	5.7	0.7920
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10003459 [exp]	7.9	0.8124
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10024830 [exp]	12.1	0.7772
AT5G15140			Galactose mutarotase-like supe...		Lus10007251 [exp]	14.3	0.8302
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	14.8	0.7932
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	19.2	0.7415
AT1G11410			S-locus lectin protein kinase ...		Lus10007610 [exp]	19.3	0.7642

Compare expression of checked genes

Lus10003479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.