Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18680 246 / 3e-84 HNH endonuclease domain-containing protein (.1) AT3G47490 135 / 4e-40 HNH endonuclease (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015728 [exp] 315 / 1e-111 AT1G18680 245 / 8e-84 HNH endonuclease domain-containing protein (.1) Lus10034462 [exp] 129 / 3e-36 AT3G47490 239 / 8e-78 HNH endonuclease (.1.2.3) Lus10019092 [exp] 97 / 6e-25 AT3G47490 206 / 4e-66 HNH endonuclease (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067700 [exp] 262 / 1e-90 AT1G18680 248 / 9e-85 HNH endonuclease domain-containing protein (.1) Potri.009G004200 [exp] 130 / 1e-38 AT3G47490 241 / 2e-81 HNH endonuclease (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0263 [flax] [poplar] His-Me_finger PF01844 [flax] [poplar] HNH HNH endonuclease
Representative CDS sequence Show only first row Show all	>Lus10003480 pacid=23182484 polypeptide=Lus10003480 locus=Lus10003480.g ID=Lus10003480.BGIv1.0 annot-version=v1.0 ATGAGCAGCTCTCCTCCGCCGCCGCAGTCGCCTCGAGGAAGTGGTGGTGGCAGTAGCGCTAACACTAACAAACACAACCCAAGATTCTTCGACCAAAATA CCAAAAACCGCTGCTGGGCCAAAGCTGACCTGGTTCCTGGCCGACACCCGGAGCGGTGGCGCAAAGATGCCGCCGGCAATATAGTCTGCAGGCGCTTTTG CAATTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATCATTCCCTTCTCCAAAGGTGGTGAATCGGTTGTGGAAAATTGCCAGATACTTCAAACTCGT GTTAACAGATACAAATCAGACAAACAAGAGATTGACAAAACTCTACTCAGAGGATACTCTTGTGATATTAACTTCACTGATAAGGACCTTGACATTATTG AGATGGCTGTTTATGGAGACGTTGTCCGGCCTGGGAACCAGTGTCGGTGCAGAAGCGTTGCCGAAATGCTTGGCCAGTTCAAGTCCAAGGATCAAACCCC TGCCTGCAAAATGCCAGCTGAATGA
AA sequence Show only first row Show all	>Lus10003480 pacid=23182484 polypeptide=Lus10003480 locus=Lus10003480.g ID=Lus10003480.BGIv1.0 annot-version=v1.0 MSSSPPPPQSPRGSGGGSSANTNKHNPRFFDQNTKNRCWAKADLVPGRHPERWRKDAAGNIVCRRFCNCQGCLCFEYDHIIPFSKGGESVVENCQILQTR VNRYKSDKQEIDKTLLRGYSCDINFTDKDLDIIEMAVYGDVVRPGNQCRCRSVAEMLGQFKSKDQTPACKMPAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18680			HNH endonuclease domain-contai...		Lus10003480 [exp]	0	1
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10003964 [exp]	3.3	0.8980
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	5.3	0.9199
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	10.5	0.9214
AT1G24560			unknown protein		Lus10013022 [exp]	11.8	0.9023
AT1G11320			unknown protein		Lus10013574 [exp]	12.1	0.9191
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002703 [exp]	14.5	0.8982
AT1G33670			Leucine-rich repeat (LRR) fami...		Lus10041065 [exp]	20.8	0.8826
					Lus10027730 [exp]	21.6	0.9022
AT2G25970			KH domain-containing protein (...		Lus10004446 [exp]	23.6	0.8991
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	24.0	0.8907

Compare expression of checked genes

Lus10003480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.