Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 94 / 4e-23 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 88 / 4e-21 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 85 / 3e-20 MADS MADS-box transcription factor family protein (.1) AT1G72350 82 / 4e-19 MADS MADS-box transcription factor family protein (.1) AT1G65360 81 / 6e-19 MADS AGL23 AGAMOUS-like 23 (.1) AT1G01530 81 / 1e-18 MADS AGL28 AGAMOUS-like 28 (.1) AT2G34440 76 / 2e-17 MADS AGL29 AGAMOUS-like 29 (.1) AT5G13790 76 / 9e-17 MADS AGL15 AGAMOUS-like 15 (.1) AT5G51860 75 / 9e-17 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT3G04100 74 / 2e-16 MADS AGL57 AGAMOUS-like 57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015726 [exp] 264 / 1e-90 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10037450 [exp] 228 / 2e-76 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1) Lus10003940 [exp] 219 / 1e-71 AT5G60440 102 / 2e-25 AGAMOUS-like 62 (.1) Lus10031073 [exp] 86 / 2e-20 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10035456 [exp] 84 / 8e-20 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1) Lus10030663 [exp] 83 / 1e-19 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10030824 [exp] 81 / 5e-19 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10040832 [exp] 76 / 4e-17 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10011787 [exp] 75 / 8e-17 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118900 [exp] 145 / 6e-44 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 92 / 3e-23 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 92 / 1e-22 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 89 / 9e-22 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 88 / 9e-22 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.009G084200 [exp] 88 / 1e-21 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.017G040700 [exp] 87 / 2e-21 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.001G251400 [exp] 86 / 6e-21 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 82 / 1e-19 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1) Potri.008G041500 [exp] 82 / 3e-19 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10003481 pacid=23182476 polypeptide=Lus10003481 locus=Lus10003481.g ID=Lus10003481.BGIv1.0 annot-version=v1.0 ATGGCGGGTAAGAAGCATCAGCAGGCGAAGAAGCCGAGCAAAGGTCGTCAGAAAATTGAGATAAAGAAAATCGAGAACGACGCCCACCGCTACGTCACCT TCTCGAAGAGGAAGAGCGGACTGTTCAAGAAGGCGACGGAGCTCTCCGCCCTCTGTGGGGCCCAGATCGCCGTCATCATCTTCTCCGAGCACCACAAGGT CTTCTCCTGCGGCCGCCCGGACGTCGATTCCCTTCTCCGCCAAACCAGCCCTAACTTGGCCCTAAACCATAATAATAATAACAATGACCACCGTGGCAAT TCTGTAAATTACAACGACTTCAACGGCAATTTCGGGATTGACAACACGATGATGGCGAGCAGCGAGAGCATGCAGAAGCAGGAGTACGTGAAGGCTGTGG AAACACTGGAGGAAGGGAAGAGGCACGTCACCGCTCTGGCAGCTTTGAGTGATTCGACGACGAGGGAGGAGTTCTGGTGGGAGGGTTGGGCTGTGGATGC TATGGAGGAGAAGGATGAGGTTCAGTCGTATAAGGAGGCGCTGATGGAGCTGAAGGAGAAGGTTTCTGCTCGGGTTGGCTCGATGCAGGACGGCTGA
AA sequence Show only first row Show all	>Lus10003481 pacid=23182476 polypeptide=Lus10003481 locus=Lus10003481.g ID=Lus10003481.BGIv1.0 annot-version=v1.0 MAGKKHQQAKKPSKGRQKIEIKKIENDAHRYVTFSKRKSGLFKKATELSALCGAQIAVIIFSEHHKVFSCGRPDVDSLLRQTSPNLALNHNNNNNDHRGN SVNYNDFNGNFGIDNTMMASSESMQKQEYVKAVETLEEGKRHVTALAALSDSTTREEFWWEGWAVDAMEEKDEVQSYKEALMELKEKVSARVGSMQDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	0	1
					Lus10032968 [exp]	7.1	0.9864
					Lus10024762 [exp]	10.0	0.9845
					Lus10038642 [exp]	10.1	0.9788
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	10.4	0.9529
AT5G36930			Disease resistance protein (TI...		Lus10026845 [exp]	12.2	0.8819
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	12.2	0.9845
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	14.1	0.9845
					Lus10043100 [exp]	14.4	0.9764
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	15.8	0.9845
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	16.0	0.9194

Compare expression of checked genes

Lus10003481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.