Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07740 669 / 0 actin binding (.1) AT5G07770 428 / 1e-133 Actin-binding FH2 protein (.1.2) AT5G58160 444 / 2e-133 actin binding (.1) AT2G25050 432 / 4e-131 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT1G31810 431 / 2e-129 AFH14 Formin Homology 14 (.1) AT5G07650 394 / 6e-120 Actin-binding FH2 protein (.1) AT3G32400 380 / 9e-119 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G07780 377 / 3e-118 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 358 / 2e-106 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 149 / 2e-39 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015724 [exp] 1253 / 0 AT5G07740 723 / 0.0 actin binding (.1) Lus10035830 [exp] 480 / 1e-146 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 476 / 4e-144 AT5G58160 608 / 0.0 actin binding (.1) Lus10003956 [exp] 430 / 1e-128 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10017556 [exp] 399 / 8e-128 AT5G07740 392 / 1e-124 actin binding (.1) Lus10023804 [exp] 427 / 1e-127 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10007447 [exp] 416 / 3e-124 AT5G58160 604 / 0.0 actin binding (.1) Lus10024450 [exp] 411 / 2e-122 AT5G58160 600 / 0.0 actin binding (.1) Lus10015725 [exp] 268 / 2e-82 AT5G07740 282 / 6e-88 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067900 [exp] 776 / 0 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 775 / 0 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 492 / 1e-160 AT5G58160 598 / 0.0 actin binding (.1) Potri.018G108000 [exp] 493 / 8e-153 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G263700 [exp] 479 / 8e-146 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G185601 [exp] 438 / 1e-138 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G019600 [exp] 454 / 2e-136 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.003G103800 [exp] 431 / 8e-129 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.002G240232 [exp] 107 / 4e-23 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G054900 [exp] 105 / 1e-22 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0154 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10003482 pacid=23182491 polypeptide=Lus10003482 locus=Lus10003482.g ID=Lus10003482.BGIv1.0 annot-version=v1.0 ATGGCGCTGTTCAGACGCTTCTTCTATCGGAAGCCGCCCGATCGGCTTCTGGAGATCTCCGAGAGAGTCTACGTTTTCGACTGTTGCTTCTCCACGGATG TCATGGAAGAAGATCAGTACAAGCTCTACTTAGGTGGCATTGTAGCACAGCTGCAGGATTACTTTCCAGATTCTTCCTTTATGGTGTTTAACTTTAGAGA AGGAGATAGACGGAGCCAAATTTCTGACATCTTGACGCAGTATGACATGACAGTTATGGATTACCCTCGTCAACACGAAGGATGTCCATTGCTGCCTCTG GAGATGGTTCATCATTTCCTACGATCCAGTGAAAGCTGGTTGTCATTGGAGGGGCAGCAAAATGTGCTGTTAATGCACTGCGAAAGAGGTGGATGGCCTG TGCTTGCTTTCATGCTTGCTGGTCTTTTGTTATATAGGGGGCAGTATAGTGGAGAGCAGAAGACTCTTGAAACGGTTTATAAGCAAGCCCCTCGAGAGCG TCAACATTTTTTGTCGGCTTTAAATCAGTACCCTTCCCAGCTTAGATATCTTCAGTATATTTCTAGAAGAAATCTTGGAGTTGATTGGCCTCCTTCCGAC ACACCATTAATTCTCGACTGCTTGATGCTAAGATCCATTCCACTGTTCGAAGGAGGAAAGGGTTGTAGGCCAGTTGTGCGTGTTTATGGCCAGGATCCTT CAAAACCCGCCAATAGAACGTCCAAGCTTTTGTATTCAACTACAAAGACTAAAAAACAAATACGGCAGTATGTACAGGAAGAGTGCATGCTTGTGAAAGT AGATCTTAGGTGCCGTGTTCAAGGTGATGTTGTTATTGAATGTGTCCACGTAGATGAGGACCTCCTGCAAGAAGAGATGATCTTCAGACTGATGTTCCAC ACAGCATTTGTGCGAGCAAATGTTTTGATGCTAAGTCGTGATGACATCGATATTATGTGGGATGCCAAAGATCAATTTCCACGGGAATTCAGGGCAGAGG TACTTTTTGCTGATGCCGACACTATTCTACCGCCTCTCACCAGAGTTCTAACCGGTGAGGATCTGGATGATTCAGAAAGTGTCACACCTGAAGAATTTTA TGAGGTGGAAGAGATATTCACAGTGGATGCACCGGAATCAAAAGGGAATTTTGATTTTAATAAAACTAAGAAGTCATCCCAATTAGAGTTTTCAGAAGTT GTGAGAGAGGATGTGGATGTGCCCTCTTTCCAAGATTGTAGGGTCGATGATCTGAACCACAAGAAAAACAGGAAGCTTAATTCTAATGTGGATGCCGTGA AGGATATTGCTGTAGATGATGTGAAGTACAGAATGGATGAGAAGGAGATTTCTGATCTTGAAGCAGTGAAAGACATTACCGTTGATAATGGGAATATGAA GTTTGGTCCCAGAAATACAATTTCTGATGTTCAGATAAATGAGGAAACAGATGTAATCACTTATGAAGCAGCTGAAGAATTCAAAATGACGGCAGATAAA GCTGATGGAGCAAGCAGTTCAAATTTGAAGTTAGAACCGAGTGTCTTATTACAGAAGCTGACTACTGAATTTGATAGAGAGAAACCGGAGAAACTGGAGC AGCCTTCTCCCTTATGGCATTTTGTCGCTAACACAAAGCCTCCAGAATCGATGCTTGCTAGGCAAAAGAAACAGGGTTTTATTTTGGGCGAGAATTTAAG ACAGATAAAGCCAGACACTCCACCACTGTGGGTGCTACATAACAAAGGTCCAGTAAGCAGTCTAATGAACGTATCACTTCCACCATCCAGGTATAATAGT GCACCACCTGATTTTCCTCGTCTTCTTGAAGAGGCCACTGCTGGTGCCAATGAAAAGTCGTCCTCTACTGCTCCCACTATCCAAGTTTTGGATTCGAGTA AGTTGATTCCTTCTTCAACTGATGATCAAGGACAGACAGCATCCATCCTTGCTTCTTCTGCAGCCTCAGGCCCGCTGCTACCACCACCACCTCCCTTGTC TTCATTTTCCAGTACAGTTTCGACGACACCCTCATTCCGGAGTCCCATTCCACCTCCACCGCCACCTCCGGCTTTCATATCATCCAGCCAGGTGAAAGTT GAAGTAGCATCTGAATGTGCAGTTCCAAAGAGCAGGTCACCACCACCACCACCACCTCCCCCTCTGCATTTCAATAATGGGCATAACAGTGGGATGACAT TGCCCACTCCTCCCTCTCTATCGTGGAAGTCTGTTCCTGTAAGTACTTATATCCCCTCTACTACTAGTCCTACACCTCCTACACATCCTCTACCACTCCA TTCTGGCAATGGGAGCACATCCAAAACATTAGAGCCTAGTATTGTAACCCCTACTACACCTTCTCTACCATCAGTACGTGGTACTCCTCTTATACCACCT CCACCGCCACCACCATATCTTCCTTCAAGGAGTGCCACAGTGCCGCCCCCGCTCCCACCACCACCACCTCCTTATGTTTCTTCAACCTTGCCTCCACCAC CTCCTTGTATTCATGAAAATGTTCATCCCCCACCTCCTCCTCCAATGCCAGGAGCACCTCCTCCACCGCCTCCTCCGAGAGGTGGGTTTGCACCTCCTCC ACCGCCTCCTCCGGGAGGTGGGTTGGCACCTCCTCCGCCGCCTCCTCCGGGAGGTGGGTTTGCACCTCCTCCGCCGCCTCCTCCAGGAGGTGGGCGCGGA CCTCCTCCACCGCCTCCACCAGGAGGTGGGCGCGGACCTCCTCCACCCCCTCCCCCCGGAGGACGTGTCCCAGGTCCCCCAGGTGGTGGACCGCCTCCAC CACCACCTTTAGGCGCCAAAGGAGCTGATGCAAGAGGCGGACCAGGTAGAGGCCGAGGGCGTGGGGGTGCTGGTATGGCACCTCGAAGATCTTCTTTGAA GCCTTTGCATTGGAGCAAGGTAACTAGGGCAATACAAGGAAGCTTGTGGGAAGAACTGCAGAGGCATGGGGAGACACAAATATTTCTCGCTAACATTCAT GTATCGTCCTCTTTGATCGGTGACCTTGCATCACTTTGTAACAGTGCACCAGCGGAATTTGACGTGTCAGAGATAGAGACCCTTTTTTCTGCAATAGTTC CAAAACCTGCTGACTCGAGTAGAACGAAAAAGAAGGCTGCTGGATCAAAACCTGACAAAGTTCAACTGATTGATCTGAGGAGGGCAAATAATACTGAAAT TATGCTCACAAAAGTTAAAATGCCTCTTTCAGACATGATGGCTGCAGTACTTGCCATGGATGAGTCGGTTTTAGATGTTGATCAAGTGGACAACCTGATA AAATTCTGTCCAACGAAAGAAGAGATGGAACAACTCAAGAACTACACCGGCGACAAGGAACTCTTGGGAAGGTGTGAACAGATCACAGAATTTAAGAGGA GCTTAAACACGGTGAACTCTGCCTGTGATGAGGTTAGAAACTCCGTCAAACTGAAGGAAATCATGAAGAAGATTCTGTATTTGGGGAACACTTTGAATCA AGGCACTGCAAGGGGTGCTGCAATTGGATTCAAGTTGGACAGTCTTCTGAAGCTTACTGATACACGTGCTGCTAACAGCAAGATGACACTTATGCATTAT CTTTGTAAGGTACTTGCTGCAAAGTCGCCGCCGCTTTTGGATTTTCACCTCGATCTGGTCAGCATTGAAACTGCCACAAAGATACAATTGAAATCTCTAG CTGAGGAAATGCAAGCTATCATCAAGGGATTGGAAAAGGTAAAACAGGAGAATGCAGCTTCAGCAAATGACGGCCCTGTATCTGACGTCTTCAGAAAGGC GTTGAAAGAATTCATTTCCGGTGCTGAGGCAGAGGTGGCATCTGTGACCAACTTATACTCTGTGGTGGGTAGAAATGCAGATGCACTTGCGTTATACTTT GGTGAGGATCCTGCTCGGTATCCTTTTGAGCAAGTTACTGCAACCCTCTTGAACTTTGTGAAGTTGTTCCGGAAAGCACATGACGAGAATTTGAAGCAGG CTGAAGCGGATAAGAAGAAAGCCGAGAAGGACGCAGAAATGGAGAAGGCAAAGGCATCGAAGAAAAGCGATACGTAG
AA sequence Show only first row Show all	>Lus10003482 pacid=23182491 polypeptide=Lus10003482 locus=Lus10003482.g ID=Lus10003482.BGIv1.0 annot-version=v1.0 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVMEEDQYKLYLGGIVAQLQDYFPDSSFMVFNFREGDRRSQISDILTQYDMTVMDYPRQHEGCPLLPL EMVHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRGQYSGEQKTLETVYKQAPRERQHFLSALNQYPSQLRYLQYISRRNLGVDWPPSD TPLILDCLMLRSIPLFEGGKGCRPVVRVYGQDPSKPANRTSKLLYSTTKTKKQIRQYVQEECMLVKVDLRCRVQGDVVIECVHVDEDLLQEEMIFRLMFH TAFVRANVLMLSRDDIDIMWDAKDQFPREFRAEVLFADADTILPPLTRVLTGEDLDDSESVTPEEFYEVEEIFTVDAPESKGNFDFNKTKKSSQLEFSEV VREDVDVPSFQDCRVDDLNHKKNRKLNSNVDAVKDIAVDDVKYRMDEKEISDLEAVKDITVDNGNMKFGPRNTISDVQINEETDVITYEAAEEFKMTADK ADGASSSNLKLEPSVLLQKLTTEFDREKPEKLEQPSPLWHFVANTKPPESMLARQKKQGFILGENLRQIKPDTPPLWVLHNKGPVSSLMNVSLPPSRYNS APPDFPRLLEEATAGANEKSSSTAPTIQVLDSSKLIPSSTDDQGQTASILASSAASGPLLPPPPPLSSFSSTVSTTPSFRSPIPPPPPPPAFISSSQVKV EVASECAVPKSRSPPPPPPPPLHFNNGHNSGMTLPTPPSLSWKSVPVSTYIPSTTSPTPPTHPLPLHSGNGSTSKTLEPSIVTPTTPSLPSVRGTPLIPP PPPPPYLPSRSATVPPPLPPPPPPYVSSTLPPPPPCIHENVHPPPPPPMPGAPPPPPPPRGGFAPPPPPPPGGGLAPPPPPPPGGGFAPPPPPPPGGGRG PPPPPPPGGGRGPPPPPPPGGRVPGPPGGGPPPPPPLGAKGADARGGPGRGRGRGGAGMAPRRSSLKPLHWSKVTRAIQGSLWEELQRHGETQIFLANIH VSSSLIGDLASLCNSAPAEFDVSEIETLFSAIVPKPADSSRTKKKAAGSKPDKVQLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDESVLDVDQVDNLI KFCPTKEEMEQLKNYTGDKELLGRCEQITEFKRSLNTVNSACDEVRNSVKLKEIMKKILYLGNTLNQGTARGAAIGFKLDSLLKLTDTRAANSKMTLMHY LCKVLAAKSPPLLDFHLDLVSIETATKIQLKSLAEEMQAIIKGLEKVKQENAASANDGPVSDVFRKALKEFISGAEAEVASVTNLYSVVGRNADALALYF GEDPARYPFEQVTATLLNFVKLFRKAHDENLKQAEADKKKAEKDAEMEKAKASKKSDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07740			actin binding (.1)		Lus10003482 [exp]	0	1
AT5G11700			unknown protein		Lus10007461 [exp]	2.0	0.9187
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	4.2	0.9367
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	7.7	0.8898
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	9.4	0.9029
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	11.5	0.8901
AT4G24610			unknown protein		Lus10015962 [exp]	12.6	0.8964
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	15.0	0.9045
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	17.9	0.8996
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10031648 [exp]	20.0	0.8978
AT4G24610			unknown protein		Lus10000766 [exp]	20.6	0.8958

Compare expression of checked genes

Lus10003482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.