Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61340 115 / 5e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015723 [exp] 380 / 8e-134 AT5G61340 135 / 2e-37 unknown protein Lus10034727 [exp] 204 / 8e-64 AT5G61340 193 / 4e-59 unknown protein Lus10021641 [exp] 197 / 5e-61 AT5G61340 191 / 5e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060900 [exp] 137 / 3e-38 AT5G61340 164 / 5e-48 unknown protein Potri.012G068000 [exp] 96 / 3e-23 AT5G61340 154 / 2e-45 unknown protein Potri.004G102800 [exp] 66 / 2e-12 AT5G61340 73 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003483 pacid=23182478 polypeptide=Lus10003483 locus=Lus10003483.g ID=Lus10003483.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCAACAAAACAACAATCACCAACTTCGATACTCAGAACCTCAATCTTCACTTTCCTCCGACACCTCCCGTTCTTCATCTCAACACCATCCT TCCTCGCCTTCCCTTTCTCAGCTTCTATCCTCCTCTCCCAATCATCCCTTCTACAAACTTCTTCAGTACTTGGGTTCGAACCCTCTTCACAGTTCTTCAA AACCATAACTCTCAAGCTTTCTCAGGCCATATTCACCATCCCATTTTCCCTCACTTTCCTCCTCTTCGCGAAATCCTCTGTTTTCACATTCTTGCAAAAC AGAGCAGCTCCTGAAATCGAATCCGTCGTCTCTTCCTCTTCTTCCGTCTTCTGGCCGTTGCTCCGGACTCAAATAGCCAGTTCGATCTTTCTGTTTGCCA TTAAAGTCTCATCCTTCATCTCCCTTTTCATCTCTTTCAACTTATTCAAATTCTCTGAGTCTTCCCCTGTTATCCTCCTCCTCATCATGATTTCTACTCC TGGAGCTGTGGTTTGCTCTGTCGTCGGCGAACTAGCTGCCGTTGTCACCGGAATGAAGCGTCAAGGAGGGTATTCAGCGGTTTTGAAGGCGGCGGCGATG ATTATGCGGGGAAGGGCTTATTCGACGGCTCTGTCTCTGGCTCTGCCGTTTAATCTGGCTATGGCGGCGATTGAAGCTCTGTTTCGGTACAGGATAGTGA GAGAATATCAATTTTCGGAGACGACGTCGTTTTCATCGTTGAGGATGCTGGTTTTCATAGGTTTGGAAGGGATTCTGATTTGCTATATGTATTCAATGGT TGTGGTTCTTAACGTCATTGTTGGATTCTTGTTGTTCTGGATTGTAAAGGAAGAAGATATTGTTTTGAGTAAATGA
AA sequence Show only first row Show all	>Lus10003483 pacid=23182478 polypeptide=Lus10003483 locus=Lus10003483.g ID=Lus10003483.BGIv1.0 annot-version=v1.0 MAAATKQQSPTSILRTSIFTFLRHLPFFISTPSFLAFPFSASILLSQSSLLQTSSVLGFEPSSQFFKTITLKLSQAIFTIPFSLTFLLFAKSSVFTFLQN RAAPEIESVVSSSSSVFWPLLRTQIASSIFLFAIKVSSFISLFISFNLFKFSESSPVILLLIMISTPGAVVCSVVGELAAVVTGMKRQGGYSAVLKAAAM IMRGRAYSTALSLALPFNLAMAAIEALFRYRIVREYQFSETTSFSSLRMLVFIGLEGILICYMYSMVVVLNVIVGFLLFWIVKEEDIVLSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61340			unknown protein		Lus10003483 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	1.4	0.8829
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	5.4	0.8835
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10017744 [exp]	6.0	0.8165
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	6.6	0.8502
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10028979 [exp]	7.4	0.8254
AT3G01860			unknown protein		Lus10041572 [exp]	15.9	0.8293
AT1G01490			Heavy metal transport/detoxifi...		Lus10024670 [exp]	16.7	0.8699
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	19.4	0.8326
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	22.8	0.8081
					Lus10029617 [exp]	22.8	0.8496

Compare expression of checked genes

Lus10003483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.