Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22680 422 / 3e-138 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 417 / 7e-136 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G49665 392 / 9e-126 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 387 / 7e-124 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 142 / 5e-35 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60710 140 / 2e-34 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 139 / 4e-34 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT1G08050 128 / 1e-30 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039635 [exp] 500 / 3e-173 AT4G37890 290 / 1e-92 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Lus10039634 [exp] 503 / 4e-173 AT2G22680 268 / 8e-83 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 236 / 8e-68 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 193 / 2e-55 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 170 / 3e-44 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 165 / 2e-42 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 140 / 2e-34 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 138 / 1e-33 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 129 / 1e-30 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107902 [exp] 485 / 4e-161 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 161 / 4e-41 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 155 / 3e-39 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 148 / 4e-37 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 137 / 1e-33 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 130 / 4e-31 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 86 / 4e-17 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.016G001300 [exp] 85 / 5e-17 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Lus10003485 pacid=23175103 polypeptide=Lus10003485 locus=Lus10003485.g ID=Lus10003485.BGIv1.0 annot-version=v1.0 ATGGTGACTGGTTGGAGACGAGCCTTCTGCACTTCAATCCCTAAGGACCAAAGGGACGCCACCCCTCCACCTCCTCCTTCTTCTTCTTCAGACGACCAAC AACAACATTGCAGCAGTAATAGCCCAACAATTAGTTCCAAGTTCGGTTTCTTCTCAAACCCATCTACTCCTCGTCCCCGCCTCCAATCTCACCTCCGCTG CCGCACCACCGCCGCCTCCCCTGCTTCTTCCCTCCCCAATAGCCCCAAACTCTCTTGCAACTCTGTACCTGCTGCCACTTCTTCCAAGTCCAATTCCTCT TCCAGCCCTCGCTTTTTCAATTTCTCAAACCCTTCCTCTCCCAAATCGCCTTCTAGTTTCTCTCTTCTCAAATCCACCCTCCGCCTCTCCAAAAGTCGAT GCGGAATATGTGCACACAGCGTGAGGAGCGGGCAAGGAACAGCTATTTTCACGGCGGAATGTAACCACGTCTTCCATTTCCCTTGCATCACTTCTCACTT CACCAAGCATCATCTCCTCCTCTGCCCAGTTTGCAACTCCTCCTGGAAGGAGCTTCCATTGCTCTCCCTCTACCCCAATTCCGAATTCCGCAAGGGTGAA TCCCGTTTCGAAATCGATTCCAAATCCAAGAATCTCAGGGTTTACAATGACGACGAGCCACTGATGTCTCCATCTCCAGGGTCTCTGTTCAATCCCATTC CGGAATTGGAAGAGAACGAATCCGAATTAGACGACGAAGACGATGAAAGTGGCCGGGGATCTAGTGACGTGGAGTTTCAGGGCTTTTTCGTAAATCCGTC TCCAGGAAAAGGCAGCAGGGCGAATAATAACAGTAACAACAATCTTCATCATCATCATCTCGTGGTGGGTGCGAAAAACGTGGAAGTTAGTTTGTTACCG GAATCTGCGGTGGTGGCTGCCGTCAGAGGGTACGAGACTCACGTGTTTGTGATGAAAGTCAGAGCTCCGCCATCCCAGCGCAGTATCCGTCGGGCTCCGG TCGATTTGGTGGCCGTTCTGGACGTCAGCGACAGAATGTGCGGAGTAGCCAAGGCACAGGTGATGAAGAGGGCTATGAAATTGGTGTTGGCTTCGTTGAC CGGAACAGACCGTCTGTCCATCGTTGCGTTCTCTGGTGGCTCCAAGCGGCTTCTGCCGTTGCGGCGGATGACGACGAACGGGAGGAAATCTGCCCGTCGT ATTGTGGAGGCGTTGGTGGGGACTACCACCCTGACTGGTCAAGGGATGAGCGTCAACGACGCTCTGAAAAAGGCAGTGAAAGTGATCGAAGACCGACGTG ACAAGAACCCGGTCGCCACCGTCTTAATCCTATCCGACGATCACCAGGATCGATCCCGAATCACTTCTCTCTCCACTTCACCGCCGGCGTTGGTTTCAAC CACGCGCTACTCGCAATTCGGCACTCCCGTTCATTCGATTAGCTTCGGAGATTTGGGTGCGTACAAGCTCGCGGCGATGGAAGATGCCTTCTCCAAGTGT TTGGGTAGGTTGTTACGGGTCGTGGTTCAGGATCTGAAGATTCAACTCGGATTCGTTACGGGTTCCGCCCCGGCAGAAATAGTAGCAGCATATCCGCTAA CGGGCCCCCCAACTGTGTTCGTACCCGGGTCGATCGGACTCGGGGATCTCCACGTCGAGGAAGAGAGGGAGGTTCTCCTGGAAGTGAGAATACCATCATC ATCATCTTCGTCCGGTGGGTCCCGACGCCTGTTGTCCGTACGTTCGTCGTTTAAGGACACCTCATCGCAGGAGCAAATGAACGGTAAAGATCAAGCTCTC ATCATTCCACGGCCACAAGCCGCCAGATCGGGAAGGCTGAAGAACGTACACGTGTCGGTTCGAGCAGTAGCGGAATCTCGGAGATTAGTAGAGCACGGCG ATTTATCAGGGGCGTATCACTTGTTGTCATCGGCTCGAGCTTTGTTGATGCAGACAAGGAGCCAAAGCTCGGCATCGGCTATGGAGTGTCTACAGTGCGT GGAGGCAGAGCTAGCCGAGGTGCAGAAGAAGAAGCCGCTGAAGACGAAGGGGAGGCAGAGCCAGCAGCAACAGAGGAGCAGTAACCGGCAGTCTGAAGCG CAAGTGGAGGAAAAGGCGGAGGCGTTGACGCCGACGTCGGCTTGGCGAGCCGCGGAGAAGTTGGCTAAGTTGGCGGTAATGAGGAAGCACATGAACAGAG TCAGCGATTTGCACGGCTTTGAGAACGCAAGATTTTGA
AA sequence Show only first row Show all	>Lus10003485 pacid=23175103 polypeptide=Lus10003485 locus=Lus10003485.g ID=Lus10003485.BGIv1.0 annot-version=v1.0 MVTGWRRAFCTSIPKDQRDATPPPPPSSSSDDQQQHCSSNSPTISSKFGFFSNPSTPRPRLQSHLRCRTTAASPASSLPNSPKLSCNSVPAATSSKSNSS SSPRFFNFSNPSSPKSPSSFSLLKSTLRLSKSRCGICAHSVRSGQGTAIFTAECNHVFHFPCITSHFTKHHLLLCPVCNSSWKELPLLSLYPNSEFRKGE SRFEIDSKSKNLRVYNDDEPLMSPSPGSLFNPIPELEENESELDDEDDESGRGSSDVEFQGFFVNPSPGKGSRANNNSNNNLHHHHLVVGAKNVEVSLLP ESAVVAAVRGYETHVFVMKVRAPPSQRSIRRAPVDLVAVLDVSDRMCGVAKAQVMKRAMKLVLASLTGTDRLSIVAFSGGSKRLLPLRRMTTNGRKSARR IVEALVGTTTLTGQGMSVNDALKKAVKVIEDRRDKNPVATVLILSDDHQDRSRITSLSTSPPALVSTTRYSQFGTPVHSISFGDLGAYKLAAMEDAFSKC LGRLLRVVVQDLKIQLGFVTGSAPAEIVAAYPLTGPPTVFVPGSIGLGDLHVEEEREVLLEVRIPSSSSSSGGSRRLLSVRSSFKDTSSQEQMNGKDQAL IIPRPQAARSGRLKNVHVSVRAVAESRRLVEHGDLSGAYHLLSSARALLMQTRSQSSASAMECLQCVEAELAEVQKKKPLKTKGRQSQQQQRSSNRQSEA QVEEKAEALTPTSAWRAAEKLAKLAVMRKHMNRVSDLHGFENARF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22680		WAVH1	WAV3 homolog 1, Zinc finger (C...		Lus10003485 [exp]	0	1
AT1G23390			Kelch repeat-containing F-box ...		Lus10029128 [exp]	11.3	0.8066
AT1G75810			unknown protein		Lus10033134 [exp]	13.6	0.7846
AT4G28300			Protein of unknown function (D...		Lus10033692 [exp]	15.7	0.7823
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	16.2	0.7525
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10030068 [exp]	22.6	0.7631
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10028595 [exp]	22.7	0.8057
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10018899 [exp]	29.5	0.7965
AT5G02090			unknown protein		Lus10024357 [exp]	30.7	0.7711
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	32.2	0.7637
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	33.3	0.7827

Compare expression of checked genes

Lus10003485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.