Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49640 499 / 8e-179 Aldolase-type TIM barrel family protein (.1.2) AT5G67220 116 / 8e-29 FMN-linked oxidoreductases superfamily protein (.1) AT4G38890 88 / 1e-18 FMN-linked oxidoreductases superfamily protein (.1) AT3G63510 48 / 6e-06 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041598 [exp] 106 / 2e-25 AT5G67220 593 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Lus10006260 [exp] 105 / 4e-25 AT5G67220 592 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Lus10035460 [exp] 96 / 3e-21 AT4G38890 870 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047300 [exp] 117 / 4e-29 AT5G67220 605 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Potri.009G125500 [exp] 93 / 2e-20 AT4G38890 886 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01207 [flax] [poplar] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Lus10003486 pacid=23175105 polypeptide=Lus10003486 locus=Lus10003486.g ID=Lus10003486.BGIv1.0 annot-version=v1.0 ATGGGCCGTCAACAGAAAATCTCCTGCAATACCCTACTTTTTATTGTGAAAATAAAAACCTGTTCGTATAATCCTATCAATGGCCGACGACCGGCTGACA GTTCCATTGATTGCCGGGCGTCAAACAGACGGACAGCCATTGCTCCTGGAAAGATGGACTACAATAACAAGCTTGTCCTTGCTCCTATGGGGACGTTGCC TTTGAGGTTGCTGGCGGCGGACTATGGAGCGGATATTACCTACGGGGAAGAGATCATTGATCATAAGATGATCAAGTGCGAACGAAGAGTTAACGAAAAC ATTGGGTGCACTGATTTCGTGGAGAAAGGAACTGAGAATATTGTTTTCAGAACCTGCCCTGAAGAAAGGAATCGGGTGGTTTTTCAAGTAGGTACGTCTG ATGCGGTGAGGGCCTTAAATGCTGCAATGCTAGTATGTAAAGATGTTGCGGCAATAGACGTCAACATGGGTTGCCCGAGGTCATTTTCTATAAGTGGTGG CATGGGTGCTGCATTGTTGACAAAGCCTGAACTCATCCATGATATTTTGACAACATTGAGGAGAAACTTGGACATTCCAGTCACATGTAAGATTCGTCTG CTGAAATGTCCTCGGGATACAGTTGAACTAGCCAGGGGAATTGAAAAAACTGGTGTTTCTGCGCTTGGTGTGCATGGAAGAAAAGTTGCAGATAGGCCAA GGGATCCAGCTAAGTGGAATGAGATATCAGATGTTGTAGCAGCATTATCTATACCAGTAATTGCAAATGGTGATGTCTTTGAGTATGGCGATTTTGAGCG TATTAGAGTTGCAACAGGTGCCACTTCTGTAATGGCTGCAAGAGGAGCTCTGTGGAATGCCTCAATTTTCTCACCGCAGGGGATAGTAGATTGGGAAGAT GTGAAAAGAGAGTATGTTCGTAAAAGTATTTTATGGGACAATGATGTTAAAAGCACAAAGCAGAGTTTGAAGGAAATGATAATGCATTACTCTTGCCTTG AACTTCCAGAAGGGAAAAGTGTTATCAAATCAGAAACATTGGCAGATATAGCGCGACTTTATGGAGAGGAGAAGTACTATCAGTTTGTGAATGCAAATCG GGCCTTACTCAACGTGCAGAGAGAGGGAGGTTTATAG
AA sequence Show only first row Show all	>Lus10003486 pacid=23175105 polypeptide=Lus10003486 locus=Lus10003486.g ID=Lus10003486.BGIv1.0 annot-version=v1.0 MGRQQKISCNTLLFIVKIKTCSYNPINGRRPADSSIDCRASNRRTAIAPGKMDYNNKLVLAPMGTLPLRLLAADYGADITYGEEIIDHKMIKCERRVNEN IGCTDFVEKGTENIVFRTCPEERNRVVFQVGTSDAVRALNAAMLVCKDVAAIDVNMGCPRSFSISGGMGAALLTKPELIHDILTTLRRNLDIPVTCKIRL LKCPRDTVELARGIEKTGVSALGVHGRKVADRPRDPAKWNEISDVVAALSIPVIANGDVFEYGDFERIRVATGATSVMAARGALWNASIFSPQGIVDWED VKREYVRKSILWDNDVKSTKQSLKEMIMHYSCLELPEGKSVIKSETLADIARLYGEEKYYQFVNANRALLNVQREGGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	0	1
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	1.4	0.9600
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	1.4	0.9705
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	2.0	0.9570
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	2.6	0.9519
AT4G12760			unknown protein		Lus10001181 [exp]	2.8	0.9511
AT3G12300			unknown protein		Lus10005383 [exp]	3.0	0.9597
					Lus10034398 [exp]	3.2	0.9562
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	4.2	0.9522
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	5.2	0.9488
AT1G04590		EMB2748	unknown protein		Lus10019008 [exp]	6.0	0.9251

Compare expression of checked genes

Lus10003486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.