Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49660 483 / 1e-173 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 381 / 4e-133 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 142 / 5e-40 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 134 / 1e-36 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 134 / 5e-35 transducin family protein / WD-40 repeat family protein (.1.2) AT2G41500 132 / 2e-34 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 123 / 1e-31 WD-40 repeat family protein / notchless protein, putative (.1) AT1G73720 121 / 6e-31 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G62020 121 / 3e-30 Coatomer, alpha subunit (.1) AT2G21390 120 / 5e-30 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039636 [exp] 605 / 0 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 385 / 8e-135 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 385 / 1e-134 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 150 / 5e-43 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 150 / 5e-43 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 155 / 8e-43 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 152 / 9e-42 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10002860 [exp] 132 / 1e-35 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 131 / 2e-35 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148500 [exp] 538 / 0 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 501 / 2e-180 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 399 / 3e-140 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 148 / 3e-42 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 150 / 6e-41 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.019G096900 [exp] 139 / 2e-38 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 129 / 2e-33 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 121 / 1e-30 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.012G074800 [exp] 121 / 2e-30 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 121 / 2e-30 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003487 pacid=23175108 polypeptide=Lus10003487 locus=Lus10003487.g ID=Lus10003487.BGIv1.0 annot-version=v1.0 ATGATGTCGGACCCAGCTCCTGACTCCTCGCTACCCTTCAAACCCTACACCCTAACCCAAACTTTGACCGGCCACAAACGCCCCATCTCCGCCGTCAAAT TCTCCTCCAACGGCCGCCTCCTGGTTTCCTCCTCCGCCGATAAAACCCTCTGCACCTACGCCCTCTCGCCTTCCAACCCTCCTTCCTCACCTCTCACCCA CGTCCAAGACTTCCAAGGCCACCTCCAAGGCGTCTCCGATGTCGCCTTCTCCTCCGACTCTCGCTTCCTCGTCTCCGCCTCCGACGACAAAACCCTCCGC CTCTGGGACGTCACCACTGGCTCCTCCATCAAGACCCTCCAGGGCCACACCAATTACGTCCTCTGTGCCAATTTCAATCCCCAGAGCAACATGATTGTGT CCGGTTCTTTCGACGAGACCGTCAGGGTTTGGGATGTGAAGAGCGGAAAGTGCTTGAAAGTCCTACCTGCTCACTCCGATCCCGTCACTGCCGTTGATTT CAATCGGGATGGTTCGCTGATTGTTTCGAGTAGCTATGATGGGTTGTGTCGGATTTGGGATTCGGGGACTGGGCATTGTATGAAAACTTTGATTGATGAG GAGAACCCTCCGGTTTCGTTTCCCAATGGCAAGTTCATTCTCGTTGGCACCCTTGATAACACTTTGAGGCTATGGAACTTCTCAACTGGGAAATTCCTAA AGACATACAGTGGCCACACAAACTCGAAATTCTGTATTTCATCAGCATTCTCGATAACAAACGGGAAGTACATTGTCAGTGGTTCAGAAGACAATGGTGT ATACTTGTGGGAACTTCAGAGCAGGAAAATAGTACAGAAGTTGGAAGGCCATTCTGACACTGTTATATCAGTAGCATGCCACCCGACCCAGAACATGATT GCATCTGGTGCACTTGGCAATGACAAAACTGTGAAGATCTGGACTCAGGAAAATGAATAG
AA sequence Show only first row Show all	>Lus10003487 pacid=23175108 polypeptide=Lus10003487 locus=Lus10003487.g ID=Lus10003487.BGIv1.0 annot-version=v1.0 MMSDPAPDSSLPFKPYTLTQTLTGHKRPISAVKFSSNGRLLVSSSADKTLCTYALSPSNPPSSPLTHVQDFQGHLQGVSDVAFSSDSRFLVSASDDKTLR LWDVTTGSSIKTLQGHTNYVLCANFNPQSNMIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCMKTLIDE ENPPVSFPNGKFILVGTLDNTLRLWNFSTGKFLKTYSGHTNSKFCISSAFSITNGKYIVSGSEDNGVYLWELQSRKIVQKLEGHSDTVISVACHPTQNMI ASGALGNDKTVKIWTQENE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10003487 [exp]	0	1
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	4.5	0.9294
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	8.0	0.9136
AT3G15000			cobalt ion binding (.1)		Lus10043130 [exp]	10.2	0.9161
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	11.2	0.9208
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10016880 [exp]	12.5	0.8905
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10016448 [exp]	13.0	0.9038
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10039009 [exp]	13.0	0.9028
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10032045 [exp]	16.5	0.9011
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10035051 [exp]	17.9	0.8939
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	19.6	0.9090

Compare expression of checked genes

Lus10003487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.