Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 181 / 5e-54 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 168 / 2e-49 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22760 163 / 2e-47 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 159 / 2e-45 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 84 / 2e-17 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 84 / 3e-17 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT5G46760 79 / 1e-15 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G01260 77 / 5e-15 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G32640 76 / 1e-14 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G16430 73 / 7e-14 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039639 [exp] 472 / 1e-167 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 201 / 4e-62 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 199 / 1e-60 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 181 / 1e-54 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 180 / 3e-54 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 162 / 3e-46 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 86 / 6e-18 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 82 / 1e-17 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10042572 [exp] 76 / 5e-16 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009400 [exp] 230 / 3e-72 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G287200 [exp] 202 / 5e-62 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 199 / 7e-61 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 195 / 2e-59 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 82 / 1e-16 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G221100 [exp] 80 / 3e-16 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 80 / 5e-16 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 80 / 5e-16 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 80 / 6e-16 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 78 / 3e-15 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003488 pacid=23175104 polypeptide=Lus10003488 locus=Lus10003488.g ID=Lus10003488.BGIv1.0 annot-version=v1.0 ATGGAGGATTACAAGTTCTTCCAACACTGTGATACAATCAACTCTGAGTTCGAGCAAAACACTGTTGCTGCAGCAGCACTACTTCCTGGAGAAGCACTCC AGCCATCTTTCTCTTCTGAGAGCTACTCATCTTACTCAGCTGGCTTCCACCACCAGTCAACTGCACCGAACACAACCATTTTCACGCCGCCGCCAGCAGC CATAAGTCGCTCCTCAATCAATGAAACATCGCAGACCAAAACCTTTGATGATCACCGACCTAACAAGCAGCAGAGGAAAACAAACAGCTGGAGCTCAAGT GTGACAACCGACCACCAGCAGCACATCGATTTCTCTTCTAATCCCCACCCTCAGATGCTTTCTTTCGACAACTCCAAATCCACCACTTCCTCTCTTCAGC CTTTGTATAAGAACGGCTTAGAGCTAACAGTGAAGCCCAAAGAGGAGGCTGACATGCTTTTTCATTCTACTACTAATACTCGGATGATGTCTGACCCTTC TGAGAACACAATCTATGCTCCAATGGGTATGAAGACTAAGCCATTTTCTTCCTTGACTAGAACCCCTTCCCACGCTCAAGATCACATCATGGCTGAGAGG AAGCGCAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTCTCATCCATCGTTCCTGGCCTCAAGAAGATGGACAAAGCTTCGGTTCTAGGGGATGCAATAA AGTACGTGAAGCATCTACAGGAGAAGATCAAACAGCTGGAGGAACAGACCAAGAAGAGAACTGTGGAGTCAGTAGTTCTGGTGAAGAGGTGTCAGCTCCC CATGGACGAGGATTCTAACTCCTCTTCTTGTGAAGATGATAACAATAACAGCAGCAAAGGTGAGAAGAAGGGATGCTGGGACTCGACGTTACCGGAGATC GAAGCCAAGGCATCAGAGAGGGATGTTATGATACGAATCCACTGCGAGAAACAGCCCGGTGTTGTGGCCAAATTGCTGTATGAAGTTGAGAGCCTCAATC TCTCCATTGTGAATAGTAGCGTGTTGCCCTTTGGAAACTCAACTGTCGACATCACCGTCATTGCTCAGATGGATGGTGAGATCTCCATGACAGTGAAGGA GGTGGTGAAGAATCTGAGATTGGCCTTTCTCAAGTTCATGTGA
AA sequence Show only first row Show all	>Lus10003488 pacid=23175104 polypeptide=Lus10003488 locus=Lus10003488.g ID=Lus10003488.BGIv1.0 annot-version=v1.0 MEDYKFFQHCDTINSEFEQNTVAAAALLPGEALQPSFSSESYSSYSAGFHHQSTAPNTTIFTPPPAAISRSSINETSQTKTFDDHRPNKQQRKTNSWSSS VTTDHQQHIDFSSNPHPQMLSFDNSKSTTSSLQPLYKNGLELTVKPKEEADMLFHSTTNTRMMSDPSENTIYAPMGMKTKPFSSLTRTPSHAQDHIMAER KRREKLSQRFIALSSIVPGLKKMDKASVLGDAIKYVKHLQEKIKQLEEQTKKRTVESVVLVKRCQLPMDEDSNSSSCEDDNNNSSKGEKKGCWDSTLPEI EAKASERDVMIRIHCEKQPGVVAKLLYEVESLNLSIVNSSVLPFGNSTVDITVIAQMDGEISMTVKEVVKNLRLAFLKFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10003488 [exp]	0	1
AT3G27390			unknown protein		Lus10032110 [exp]	1.7	0.8939
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	3.5	0.8899
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	3.5	0.8907
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	6.3	0.8653
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10020726 [exp]	7.5	0.8664
AT3G50140			Plant protein of unknown funct...		Lus10037762 [exp]	11.5	0.8497
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10027404 [exp]	12.2	0.8369
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	14.3	0.8612
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	14.5	0.8393
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10031665 [exp]	15.2	0.8267

Compare expression of checked genes

Lus10003488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.